Topic: ncbi Goto Github
Some thing interesting about ncbi
Some thing interesting about ncbi
ncbi,Julia package to handle the NCBI Taxonomy database.
User: banhbio
ncbi,simplified searching, fetching, and parsing records from NCBI using their E-utilities interface
Organization: biocommons
ncbi,An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
Organization: datasnakes
Home Page: https://orthoevolution.readthedocs.io/en/master/
ncbi,Utilities for interacting with NCBI EUtilities relating to PubMed
User: dhimmel
Home Page: https://pypi.org/project/pubmedpy/
ncbi,Turbocharge a PubMed literature search using citation counts and data from the NIH
User: dvklopfenstein
ncbi,:stars: Easily download genomes and build BLAST/Bowtie indexes in Python
Organization: edinburgh-genome-foundry
Home Page: https://edinburgh-genome-foundry.github.io/genome_collector/
ncbi,This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
User: eslam-samir-ragab
Home Page: https://sites.google.com/pharma.cu.edu.eg/eslam-ibrahim/github-and-softwares/sddc-program
ncbi,:seedling: :arrow_right: :deciduous_tree: Add new taxa or taxonomic groups to the NCBI Taxdump files
User: guyleonard
ncbi,:hatching_chick: locally query the ncbi taxonomy
User: hadrieng
Home Page: http://taxadb.readthedocs.io/
ncbi,一个批量下载pubmed免费文献的python小工具
User: hiddenblue
ncbi,Module and script to remove contamination in assembled genomes before submission to ncbi
User: htafer
ncbi,Parser (unofficial) for ncbi GenBank data
User: j-i-l
Home Page: https://j-i-l.github.io/GenBankParser/
ncbi,Scripts to download genomes from the NCBI FTP servers
User: kblin
ncbi,Parse sequence files (GenBank, FASTA, SnapGene, SBOL) and accession IDs (NCBI, iGEM) to a common format
Organization: lattice-automation
ncbi,To get taxonomy ranks information with ETE3 Python3 module (http://etetoolkit.org/)
User: linzhi2013
ncbi,Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.
User: maximilianh
ncbi,Set of tools for viral metagenomics.
Organization: medvir
ncbi,This python script detects known traits in raw human genetic data.
User: michaelsebero
ncbi,An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter
Organization: ncbi-hackathons
ncbi,Disease Clustering from Literature Based on Minimal Training Data
Organization: ncbi-hackathons
ncbi,A fast, easy way to present complex bioinformatics pipelines to biologists
Organization: ncbi-hackathons
ncbi,Subclassification of disease states based on the intersection of literature and expression
Organization: ncbi-hackathons
ncbi,UPWARD: Uniting People Working Against Rare Diseases
Organization: ncbi-hackathons
ncbi,
Organization: ncbi-hackathons
ncbi,NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
Organization: ncbi
Home Page: https://www.ncbi.nlm.nih.gov/datasets
ncbi,dbSNP
Organization: ncbi
Home Page: https://www.ncbi.nlm.nih.gov/snp
ncbi,ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective
Organization: ncbi
Home Page: https://blast.ncbi.nlm.nih.gov/doc/elastic-blast
ncbi,🧬 gget enables efficient querying of genomic reference databases
Organization: pachterlab
Home Page: https://gget.bio
ncbi,This script uses NCBI's Entrez Programming Utilities to perform searches of NCBI databases. This script can return either the complete database records, or the IDs of the records.
User: paulstothard
ncbi,Make phylogenetic trees and lineages from the NCBI Taxonomy database
User: picani
ncbi,ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
User: pirovc
Home Page: https://pirovc.github.io/ganon/
ncbi,Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)
User: pirovc
Home Page: https://pirovc.github.io/multitax/
ncbi,C++ tools for NCBI taxonomy tasks
User: pmenzel
ncbi,Wrapper around the NCBI taxonomy files
Organization: poisotlab
Home Page: https://poisotlab.github.io/NCBITaxonomy.jl/stable/
ncbi,Utilities for downloading and managing protein FASTA files.
User: pwilmart
ncbi,Pipeline for RNA-seq analysis
User: rohitsuratekar
ncbi,Mapping NCBI Genbank accession to GTDB accession
User: shenwei356
ncbi,Toolkits for NCBI Pubmed
User: suqingdong
Home Page: https://suqingdong.github.io/pypubmed/
ncbi,genes and genomes at your fingertips
Organization: vanheeringen-lab
Home Page: https://vanheeringen-lab.github.io/genomepy/
ncbi,R mased batch sequence downloader, with primer development and in silico evaluation capabilities
User: vascoelbrecht
ncbi,PipeTaxon exposes the ncbi taxonomy database as a REST API.
User: voorloopnul
Home Page: http://labs.voorloop.com/pipetaxon/
ncbi,🐞 Convert NCBI taxonomy dump into lineages
User: zyxue
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