Topic: alphafold2 Goto Github
Some thing interesting about alphafold2
Some thing interesting about alphafold2
alphafold2,Predicting probable drug-binding sites for thousands of human proteins using AlphaFold2 predicted 3D protein structures.
User: adriandavila
alphafold2,Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
Organization: aqlaboratory
alphafold2,Infrastructure template and Jupyter notebooks for running RoseTTAFold on AWS Batch.
Organization: aws-samples
alphafold2,Tracking publications on AlphaFold 2 and its applications.
User: ayushnoori
Home Page: http://www.ayushnoori.com/alphafold-tracker
alphafold2,Trainable PyTorch framework for developing protein, RNA and complex models.
Organization: baaihealth
alphafold2,molecular graph representation
User: branchialspace
alphafold2,PyMOL extension to color AlphaFold structures by confidence (pLDDT).
User: cbalbin-bio
alphafold2,AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions
User: colbyford
Home Page: https://www.frontiersin.org/articles/10.3389/fviro.2022.830202
alphafold2,Predicting Antibody and ACE2 Affinity for SARS-CoV-2 BA.2.86 with In Silico Protein Modeling and Docking
User: colbyford
Home Page: https://www.frontiersin.org/articles/10.3389/fviro.2024.1419276/abstract
alphafold2,Trainable AlphaFold implementation in JAX
Organization: dptech-corp
alphafold2,Exploring Evolution-aware & free protein language models as protein function predictors
User: elttaes
alphafold2,AlphaMod's official repository for protein folding
User: fabio-gil-z
alphafold2,Implementation of Alphafold 2 monomer to run only with MSAs
User: fbarenys
alphafold2,Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
User: flyark
Home Page: https://www.flyrnai.org/tools/fly_predictome
alphafold2,GUI for running jobs with a local installation of AlphaFold2. Supports submission to queuing systems.
Organization: fmi-basel
alphafold2,Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
User: freshairtonight
alphafold2,Using AlphaFold Artificial Intelligence for prediction Coronavirus glycoprotein structures
User: gromdimon
alphafold2,Optimizing AlphaFold Training and Inference on GPU Clusters
Organization: hpcaitech
alphafold2,Repo for AlphaFold research project at DKU
User: iamyufan
alphafold2,FrameDiPT: an SE(3) diffusion model for protein structure inpainting
Organization: instadeepai
Home Page: https://www.biorxiv.org/content/10.1101/2023.11.21.568057v2
alphafold2,LightMHC: A Light Model for pMHC Structure Prediction with Graph Neural Networks
Organization: instadeepai
Home Page: https://www.biorxiv.org/content/10.1101/2023.11.21.568015v1
alphafold2,This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
User: johnnytam100
Home Page: https://doi.org/10.1002/pmic.202300176
alphafold2,A curated list of awesome protein design research, software and resources.
User: johnnytam100
alphafold2,OpenFold non-docker setup
Organization: kalininalab
alphafold2,Run AlphaFold2 (and multimer) step by step
User: lipan6461188
alphafold2,A python software to parse AlphaFold/ColabFold results into PyMOL PSE and PAE plots.
User: mabdulqader172
alphafold2,C++ package that provides tools for correcting structural predictions of proteins (eg. from X-Ray Crystallography or AlphaFold) using X-ray small-angle scattering (SAXS) in solution
User: mckeownish
alphafold2,This Google colab notebook, allows for conservation analysis of user input genes, on their local machine. It relies on the MMSeq2 introduced by https://www.nature.com/articles/s41592-022-01488-1
User: mishterbluesky
Home Page: https://www.rodrigueslab.com/
alphafold2,Repository with scripts and data generated during my internship at Institut Pasteur of Paris
User: mvictoriabuss
alphafold2,AlphaFold 2's confidence scores put into context
User: neftlon
alphafold2,Protein 3D structure prediction pipeline
Organization: nf-core
Home Page: https://nf-co.re/proteinfold
alphafold2,The Python software re-glycosylates protein structures using MD simulation results from the glycoshape database. It takes alphafold protein structures as input and outputs modified structures with glycans added at appropriate sites.
User: ojas-singh
Home Page: https://glycoshape.org
alphafold2,A tool to visualise the results of AlphaFold2 and inspect the quality of structural predictions
User: orpowell
alphafold2,𧬠gget enables efficient querying of genomic reference databases
Organization: pachterlab
Home Page: https://gget.bio
alphafold2,A curated list of awesome self-learning materials in Computational Structural Biology, such as sources, tutorials, etc.
User: pengzhangzhi
alphafold2,An implementation of Invariant Point Attention from Alphafold 2
User: rishit-dagli
alphafold2,A program that compares a protein structure prediction to a solved structure and evaluates the prediction's accuracy using RMSD.
User: rsrchen
alphafold2,πCharges: A tool for the quick calculation of partial atomic charges for protein structures from AlphaFoldDB
Organization: sb-ncbr
Home Page: https://alphacharges.ncbr.muni.cz/
alphafold2,FFFold: A tool for the quick optimisation of protein structures from AlphaFold DB
Organization: sb-ncbr
Home Page: https://fffold.biodata.ceitec.cz/
alphafold2,Cryptic pocket prediction using AlphaFold 2
User: sbhakat
alphafold2,Automated generation of immunogenic peptides from protein structures and molecular docking analysis using AlphaFold2 and AutodockVina.
User: sergeinikolenko
alphafold2,A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. PROST uses colab AlhpaFold2 for the prediction of pdb struture from FASTA sequence.
User: shahidiqb
alphafold2,Fix Database problem for AlphaFold by updating some databases.
User: shall-we-dance
alphafold2,MMseqs2 app to run on your workstation or servers
Organization: soedinglab
Home Page: https://search.foldseek.com
alphafold2,
Organization: thu-atom
Home Page: https://yanyanlan.com/project/airfold/
alphafold2,A Tufts Research Technology Workshop detailing how to use AlphaFold 2 on the Tufts HPC cluster
Organization: tuftsdatalab
Home Page: https://tuftsdatalab.github.io/Intro_To_AlphaFold2/
alphafold2,Large scale, in silico interaction analyses of SARS-CoV-2 nucleocapsid protein variants against human cytokines.
Organization: tuplexyz
Home Page: https://www.frontiersin.org/articles/10.3389/fbinf.2024.1397968/full
alphafold2,[ICLR'24 spotlight] Saprot: Protein Language Model with Structural Alphabet
Organization: westlake-repl
alphafold2,A curated list of awesome Molecular Modeling And Drug Discovery π₯
User: wudangt
alphafold2,Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures
User: zuricho
Home Page: https://parafold.sjtu.edu.cn
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