Topic: protein Goto Github
Some thing interesting about protein
Some thing interesting about protein
protein,Protein Graph Library
User: a-r-j
Home Page: https://graphein.ai/
protein,Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)
User: a-r-j
Home Page: https://proteins.sh/
protein,Physicochemical properties, indices and descriptors for amino-acid sequences.
User: althonos
protein,Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.
User: angelruizmoreno
protein,Python module for drawing and rendering beautiful atoms and molecules using Blender.
Organization: beautiful-atoms
Home Page: https://beautiful-atoms.readthedocs.io/en/latest/
protein,Bio4j abstract model and general entry point to the project
Organization: bio4j
Home Page: http://www.bio4j.com
protein,Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
User: biologyguy
protein,Official git repository for Biopython (originally converted from CVS)
Organization: biopython
Home Page: http://biopython.org/
protein,Toolbox for molecular animations in Blender, powered by Geometry Nodes.
User: bradyajohnston
Home Page: https://bradyajohnston.github.io/MolecularNodes/
protein,LLM for Drug Editing, ICLR 2024
User: chao1224
Home Page: https://chao1224.github.io/ChatDrug
protein,Evolutionary couplings from protein and RNA sequence alignments
Organization: debbiemarkslab
Home Page: http://evcouplings.org
protein,Graph Network for protein-protein interface
Organization: deeprank
protein,Neural Networks for Protein Sequence Alignment
Organization: flatironinstitute
protein,A collection of awesome things regarding all omics.
User: flowhub-team
protein,Ribbon diagrams of proteins in #golang.
User: fogleman
protein,:fork_and_knife: Food Nutrients
Organization: food-nutrients
Home Page: http://food-nutrients.github.io
protein,A dependency-free cross-platform swiss army knife for PDB files.
Organization: haddocking
Home Page: https://haddocking.github.io/pdb-tools/
protein,Scientific Large Language Models: A Survey on Biological & Chemical Domains
Organization: hicai-zju
Home Page: http://scimind.ai/resource
protein,A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
Organization: j-snackkb
protein,View proteins and trajectories in the terminal
User: jgreener64
protein,FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
User: josiahseaman
protein,Picotti lab data analysis package.
User: jpquast
Home Page: https://jpquast.github.io/protti/
protein,Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
User: kirillkryukov
Home Page: http://kirill-kryukov.com/study/naf/
protein,a JavaScript DNA, RNA, and protein sequence viewer
Organization: lattice-automation
Home Page: https://tools.latticeautomation.com/seqviz
protein,Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Organization: lightdock
Home Page: https://lightdock.org/
protein,ProteinGCN: Protein model quality assessment using Graph Convolutional Networks
Organization: malllabiisc
protein,Diffusion models of protein structure; trigonometry and attention are all you need!
Organization: microsoft
Home Page: https://www.nature.com/articles/s41467-024-45051-2
protein,VSCode Extension for interactively visualising protein structure data in the editor
Organization: molstar
protein,Python package to annotate and visualize gene fusions.
User: murphycj
Home Page: https://www.agfusion.app
protein,web-based protein structure viewer and analysis tool interactively or in batch mode
Organization: ncbi
Home Page: https://www.ncbi.nlm.nih.gov/Structure/icn3d
protein,Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.
Organization: oatml
Home Page: http://evemodel.org/
protein,A collection of research papers for AI-based protein design
Organization: opendilab
protein,Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.
Organization: peptoneltd
Home Page: https://peptone.io/dspp
protein,Differentiable molecular simulation of proteins with a coarse-grained potential
Organization: psipred
protein,Self-supervised models for encoding protein localization patterns from microscopy images
Organization: royerlab
protein,Official release of the ProGen models
Organization: salesforce
protein,Protein-compound affinity prediction through unified RNN-CNN
User: shen-lab
protein,This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of Simplified Attention
Organization: songlab-cal
Home Page: https://psb.stanford.edu/psb-online/proceedings/psb22/bhattacharya.pdf
protein,🧬 An R package for visualizing molecular data in 3D
User: swsoyee
Home Page: https://swsoyee.github.io/r3dmol/
protein,A Python package for extracting protein sequence features
User: tadorfer
protein,Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
User: twoxes
protein,Protein structure comparison tools such as SSAP and SNAP
Organization: uclorengogroup
Home Page: http://cath-tools.readthedocs.io
protein,Fast and flexible ORF finder
User: urmi-21
protein,[ICLR'24 spotlight] Saprot: Protein Language Model with Structural Alphabet
Organization: westlake-repl
protein,[ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models
Organization: zjunlp
protein,[ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding
Organization: zjunlp
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