Topic: mdanalysis Goto Github
Some thing interesting about mdanalysis
Some thing interesting about mdanalysis
mdanalysis,Multivariate analysis for glass type dataset. Techniques applied: PCA, LDA/QDA and clustering
User: 0j0p0
mdanalysis,Analysis scripts for the CHARMM GUI Drude Prepper Paper
User: aakognole
mdanalysis,Analyze interactions between two fully-charged PAA chains with varying amounts of CaCl2 added
User: alec-glisman
mdanalysis,Scripts to prepare and analyze molecular dynamics simulations
User: andthum
mdanalysis,Transfer Li ions from cathode to anode in MD simulations
User: andthum
mdanalysis,Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.
User: angelruizmoreno
mdanalysis,A batteries-included toolkit of analysis modules and helper functions for molecular dynamics (MD) simulations.
User: bbye98
Home Page: https://bbye98.github.io/mdhelper/
mdanalysis,Solvent network analysis. Hop is a python package based on MDAnalysis to analyze solvation dynamics.
Organization: becksteinlab
Home Page: https://hop.readthedocs.io
mdanalysis,prototype IMDReader for MDAnalysis
Organization: becksteinlab
Home Page: https://imdreader.readthedocs.io/
mdanalysis,Benchmarking MDAnalysis with dask.
Organization: becksteinlab
mdanalysis,Benchmarking MDAnalysis with Dask (and MPI). Supplementary Information for SciPy 2017 paper.
Organization: becksteinlab
Home Page: http://conference.scipy.org/proceedings/scipy2017/mahzad_khoslessan.html
mdanalysis,pKa estimates for proteins using an ensemble approach
Organization: becksteinlab
Home Page: https://becksteinlab.github.io/propkatraj/
mdanalysis,zarrtraj MDAKit for @MDAnalysis
Organization: becksteinlab
Home Page: https://zarrtraj.readthedocs.io/
mdanalysis,Analyse Rotational Diffusion Tensor from MD Simulations
Organization: bio-phys
mdanalysis,FreeSASA and MDAnalysis trials
User: born-2learn
mdanalysis,SAPT energy calculator built using MDAnalysis and Psi4
Organization: calpolyccg
mdanalysis,Interaction Fingerprints for protein-ligand complexes and more
Organization: chemosim-lab
Home Page: https://prolif.readthedocs.io
mdanalysis,A toolkit featured artificial intelligence × ab initio for computational chemistry research.
Organization: chenggroup
Home Page: http://wiki.cheng-group.net/ai2-kit_doc
mdanalysis,Python code for publication investigating Synaptotagmin-1 membrane interaction
Organization: cschmidtlab
mdanalysis,a logistics and persistence engine for the analysis of molecular dynamics trajectories
Organization: datreant
Home Page: http://mdsynthesis.readthedocs.org
mdanalysis,Compilation of different scripts used for my MD analysis
User: jeiros
mdanalysis,a python package for the interfacial analysis of molecular simulations
User: marcello-sega
Home Page: https://marcello-sega.github.io/pytim/
mdanalysis,Performance benchmarks of MDAnalysis provided by ASV.
Organization: mdanalysis
Home Page: https://www.mdanalysis.org/benchmarks/
mdanalysis,Notebooks for interactive use on https://mybinder.org/
Organization: mdanalysis
Home Page: https://mybinder.org/v2/gh/MDAnalysis/binder-notebook/master?filepath=notebooks
mdanalysis,Command line interface for MDAnalysis
Organization: mdanalysis
Home Page: https://mdacli.readthedocs.io/
mdanalysis,An MDAKit implementing a Python interface for the HOLE program.
Organization: mdanalysis
Home Page: https://www.mdanalysis.org/mdahole2/
mdanalysis,MDAKits whitepaper (LaTeX sources).
Organization: mdanalysis
Home Page: https://github.com/MDAnalysis/mdakits
mdanalysis,MDAnalysis is a Python library to analyze molecular dynamics simulations.
Organization: mdanalysis
Home Page: https://mdanalysis.org
mdanalysis,Access to data for workshops and extended tests of MDAnalysis.
Organization: mdanalysis
Home Page: https://www.mdanalysis.org/MDAnalysisData
mdanalysis,MDAnalysis tool to calculate membrane curvature.
Organization: mdanalysis
Home Page: https://membrane-curvature.readthedocs.io/
mdanalysis,Parallel algorithms for MDAnalysis
Organization: mdanalysis
Home Page: https://www.mdanalysis.org/pmda/
mdanalysis,Analysis of molecular dynamics trajectories or conformational ensembles in terms of spin-label distances as probed in double electron-electron resonance (DEER) experiments.
Organization: mdanalysis
Home Page: https://www.mdanalysis.org/RotamerConvolveMD
mdanalysis,Tutorial for SPIDAL presentation at workshop, showing how to use Midas radical.pilot to analyze an ensemble of MD trajectories with Path Similarity Analysis (as implemented in MDAnalysis).
Organization: mdanalysis
Home Page: https://www.mdanalysis.org/SPIDAL-MDAnalysis-Midas-tutorial/
mdanalysis,Materials for the 2021 PRACE Workshop @ SurfSARA
Organization: mdanalysis
mdanalysis,Tactic MMIC translator for MDAnalysis/MMSchema
Organization: molssi
mdanalysis,Python module: Calculation of helices angle during MD
User: moutoussamy
mdanalysis,User friendly molecular dynamics simulation combining GROMACS and Google Colab: A complete guide
User: paulshamrat
mdanalysis,Molecular Dynamics - Simulation Analysis and Preparation Suite
User: ravenswing
mdanalysis,Auxiliary tools and scripts initially made for my PhD projects.
User: ravenswing
mdanalysis,pyLFDA is a tool which allows analysis of pairwise lipid force distribution along with other functions such as curvature and diffusion.
Organization: raylabiiitd
mdanalysis,Molecular Dynamics Simulation of Alanine Dipeptide and Dihedral Angle Analysis
User: sbrodehl
mdanalysis,About This is code for analyzing the xtc file used in GROMACS, a molecular dynamics simulation program.
User: seunginhwang
mdanalysis,This is code for analyzing the gro/xtc file used in GROMACS, a molecular dynamics simulation program.
User: seunginhwang
Home Page: https://github.com/seunginhwang
mdanalysis,Face detection (class and pose) using various Classifiers - Own Implementation
User: siddharthtelang
mdanalysis,Perform post-mortem analysis using Python and MDAnalysis
User: simongravelle
Home Page: https://lammpstutorials.github.io/
mdanalysis,A package for molecular dynamics analysis and parallel tempering in GROMACS
User: theavey
mdanalysis,Face recognition using various classifiers
User: urastogi885
mdanalysis,Fast and accurate aerodynamic modeling using general numerical lifting-line theory.
Organization: usuaero
Home Page: https://machupx.readthedocs.io/en/latest/
mdanalysis,Fork of library used in reading xtc files from GROMACS simulations
User: wesbarnett
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