Topic: protein-structure Goto Github
Some thing interesting about protein-structure
Some thing interesting about protein-structure
protein-structure,Protein Graph Library
User: a-r-j
Home Page: https://graphein.ai/
protein-structure,Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)
User: a-r-j
Home Page: https://proteins.sh/
protein-structure,Versatile computational pipeline for processing protein structure data for deep learning applications.
Organization: adaptyvbio
Home Page: https://adaptyvbio.github.io/ProteinFlow/
protein-structure,Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.
User: angelruizmoreno
protein-structure,Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
Organization: aqlaboratory
protein-structure,Standardized data set for machine learning of protein structure
Organization: aqlaboratory
protein-structure,Recurrent Geometric Networks for end-to-end differentiable learning of protein structure
Organization: aqlaboratory
protein-structure,Trainable PyTorch framework for developing protein, RNA and complex models.
Organization: baaihealth
protein-structure,DeeplyTough: Learning Structural Comparison of Protein Binding Sites
Organization: benevolentai
protein-structure,:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Organization: biojava
Home Page: https://biojava.org
protein-structure,:book::books:An introductory tutorial for BioJava
Organization: biojava
Home Page: http://www.biojava.org
protein-structure,A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
Organization: biojulia
protein-structure,A PyTorch framework for prediction of tertiary protein structure
Organization: biolib
protein-structure,Working with molecular structures in pandas DataFrames
Organization: biopandas
Home Page: https://BioPandas.github.io/biopandas/
protein-structure,Official git repository for Biopython (originally converted from CVS)
Organization: biopython
Home Page: http://biopython.org/
protein-structure,Toolbox for molecular animations in Blender, powered by Geometry Nodes.
User: bradyajohnston
Home Page: https://bradyajohnston.github.io/MolecularNodes/
protein-structure,Inference of couplings in proteins and RNAs from sequence variation
Organization: debbiemarkslab
protein-structure,An open-source platform for developing protein models beyond AlphaFold.
Organization: dptech-corp
Home Page: https://doi.org/10.1101/2022.08.04.502811
protein-structure,Neural Networks for Protein Sequence Alignment
Organization: flatironinstitute
protein-structure,EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
User: hannesstark
protein-structure,Optimizing AlphaFold Training and Inference on GPU Clusters
Organization: hpcaitech
protein-structure,🧬 ManyFold: An efficient and flexible library for training and validating protein folding models
Organization: instadeepai
protein-structure,View proteins and trajectories in the terminal
User: jgreener64
protein-structure,Predicting protein structure through sequence modeling
User: jonathanking
protein-structure,An all-atom protein structure dataset for machine learning.
User: jonathanking
protein-structure,Molecular simulation in Julia
Organization: juliamolsim
protein-structure,Geometric deep learning method to predict protein binding interfaces from a protein structure.
Organization: lbm-epfl
Home Page: https://pesto.epfl.ch
protein-structure,Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Organization: lightdock
Home Page: https://lightdock.org/
protein-structure,Protein Secondary Structure predictor using Convolutional Neural Networks
User: lucaangioloni
protein-structure,A denoising diffusion probabilistic model (DDPM) tailored for conditional generation of protein distograms
User: lucidrains
protein-structure,Deep generative models of 3D grids for structure-based drug discovery
User: mattragoza
protein-structure,VSCode Extension for interactively visualising protein structure data in the editor
Organization: molstar
protein-structure,This is the repository for the Stmol project, a Streamlit component that uses py3Dmol to render molecules.
User: napoles-uach
Home Page: https://github.com/napoles-uach/stmol
protein-structure,A collection of research papers for AI-based protein design
Organization: opendilab
protein-structure,Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.
Organization: peptoneltd
Home Page: https://peptone.io/dspp
protein-structure,Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
Organization: pharmai
Home Page: http://plip.biotec.tu-dresden.de
protein-structure,macromolecular crystallography library and utilities
Organization: project-gemmi
Home Page: https://project-gemmi.github.io/
protein-structure,Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
Organization: psipred
protein-structure,P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
User: rdk
Home Page: https://rdk.github.io/p2rank/
protein-structure,Get protein embeddings from protein sequences
User: sacdallago
Home Page: http://docs.bioembeddings.com
protein-structure,A Python framework for structural systems biology
Organization: sbrg
Home Page: http://ssbio.readthedocs.io/en/latest/
protein-structure,Remote protein homology detection suite.
Organization: soedinglab
Home Page: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-3019-7
protein-structure,Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
Organization: songlab-cal
Home Page: https://www.biorxiv.org/content/10.1101/676825v1
protein-structure,Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology. (DEPRECATED)
Organization: songlab-cal
Home Page: https://arxiv.org/abs/1906.08230
protein-structure,Compressing protein structures effectively with torsion angles
Organization: steineggerlab
protein-structure,Foldseek enables fast and sensitive comparisons of large structure sets.
Organization: steineggerlab
Home Page: https://foldseek.com
protein-structure,🧬 An R package for visualizing molecular data in 3D
User: swsoyee
Home Page: https://swsoyee.github.io/r3dmol/
protein-structure,Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
User: tbepler
protein-structure,Saprot: Protein Language Model with Structural Alphabet
Organization: westlake-repl
protein-structure,A Python API for the RCSB Protein Data Bank (PDB)
User: williamgilpin
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