Topic: molecular-dynamics-simulation Goto Github
Some thing interesting about molecular-dynamics-simulation
Some thing interesting about molecular-dynamics-simulation
molecular-dynamics-simulation,Corrections to the text of the book "Computer Simulation of Liquids" by Michael P. Allen and Dominic J. Tildesley (2nd edition, Oxford University Press, 2017)
User: allen-tildesley
molecular-dynamics-simulation,Fortran and Python examples to accompany the book "Computer Simulation of Liquids" by Michael P. Allen and Dominic J. Tildesley (2nd edition, Oxford University Press, 2017). Use the "Code" button, or follow the "Releases" link below.
User: allen-tildesley
molecular-dynamics-simulation,Sparse Gaussian Process Potentials
User: amirhajibabaei
molecular-dynamics-simulation,Real time molecular dynamics in the browser using LAMMPS
User: andeplane
molecular-dynamics-simulation,A program implementing event driven molecular dynamics for hard smooth spheres, using OpenGL for displaying
User: aromanro
Home Page: https://compphys.go.ro/event-driven-molecular-dynamics/
molecular-dynamics-simulation,A solar system simulator with Verlet, using OpenGL for displaying.
User: aromanro
Home Page: https://compphys.go.ro/newtonian-gravity/
molecular-dynamics-simulation,pKa estimates for proteins using an ensemble approach
Organization: becksteinlab
Home Page: https://becksteinlab.github.io/propkatraj/
molecular-dynamics-simulation,Sample codes for my CUDA programming book
User: brucefan1983
molecular-dynamics-simulation,Graphics Processing Units Molecular Dynamics
User: brucefan1983
Home Page: https://gpumd.org/dev
molecular-dynamics-simulation,Sample codes for my book on molecular dynamics simulation
User: brucefan1983
molecular-dynamics-simulation,CHAP is a tool for the functional annotation of ion channel structures:
User: channotation
Home Page: http://www.channotation.org
molecular-dynamics-simulation,Automated omics-scale protein modeling and simulation setup.
Organization: choderalab
Home Page: http://ensembler.readthedocs.io/
molecular-dynamics-simulation,An open, extensible Python framework for GPU-accelerated alchemical free energy calculations.
Organization: choderalab
Home Page: http://getyank.org
molecular-dynamics-simulation,The d-SEAMS C++ core engine
Organization: d-seams
Home Page: https://dseams.info
molecular-dynamics-simulation,RMD_digging is aimed to provide pre-processing and post-processing tools for the reactive molecular dynamics (ReaxFF) simulations based on MATLAB language, including formatting the reactive force field parameters, statistic anasysis of structures, trajectories and mechanisms and output of the visualization files.
User: dadaoqiuzhi
molecular-dynamics-simulation,a logistics and persistence engine for the analysis of molecular dynamics trajectories
Organization: datreant
Home Page: http://mdsynthesis.readthedocs.org
molecular-dynamics-simulation,A codebase for classical molecular dynamics (MD) simulation setup and results analysis.
Organization: hougroup
Home Page: https://mdgo.readthedocs.io/
molecular-dynamics-simulation,
User: isra3l
molecular-dynamics-simulation,Julia language implementation of the Cell Lists algorithm to solve the fixed-radius near neighbors problem including serial and multithreaded algorithms.
User: jaantollander
Home Page: https://jaantollander.github.io/CellLists.jl/stable/
molecular-dynamics-simulation,Set of tools for input preparation for conserved water search from MD trajectories (gromacs, amber) and their analysis
User: jecatosovic
Home Page: https://waternetworkanalysis.readthedocs.io/en/latest/
molecular-dynamics-simulation,Monte Carlo and Molecular Dynamics Simulation Package
User: khavernathy
molecular-dynamics-simulation,Web Platform made with Python and NextJS for automating GROMACS simulations
Organization: labioquim
Home Page: https://visualdynamics.fiocruz.br
molecular-dynamics-simulation,LAMMPS tutorials for both beginners and advanced users
User: lammpstutorials
Home Page: https://lammpstutorials.github.io/
molecular-dynamics-simulation,A repository for tutorials and FAQ's about LigParGen
User: leelasd
Home Page: http://traken.chem.yale.edu/ligpargen/
molecular-dynamics-simulation,Command files needed to install LigParGen locally
User: leelasd
Home Page: http://traken.chem.yale.edu/ligpargen/
molecular-dynamics-simulation,Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.
Organization: lolab-msm
molecular-dynamics-simulation,ls1-MarDyn is a massively parallel Molecular Dynamics (MD) code for large systems. Its main target is the simulation of thermodynamics and nanofluidics. ls1-MarDyn is designed with a focus on performance and easy extensibility.
Organization: ls1mardyn
Home Page: http://www.ls1-mardyn.de
molecular-dynamics-simulation,Flexible implementation of cell lists to map the calculations of particle-pair dependent functions, such as forces, energies, neighbor lists, etc.
Organization: m3g
Home Page: https://m3g.github.io/CellListMap.jl/
molecular-dynamics-simulation,Package to perform minimum-distance distribution analyses of complex solute-solvent interactions
Organization: m3g
Home Page: https://m3g.github.io/ComplexMixtures.jl/
molecular-dynamics-simulation,MiniMD Molecular Dynamics Mini-App
Organization: mantevo
Home Page: http://www.mantevo.org
molecular-dynamics-simulation,A python framework to run adaptive Markov state model (MSM) simulation on HPC resources
Organization: markovmodel
molecular-dynamics-simulation,ๅๅญใทใใฅใฌใผใทใงใณใฎ็่ซใ้ข้ฃใใใใใใฏใใพใจใใใใผใ
User: masatakaym
Home Page: https://masatakaym.github.io/Molecular-Simulation/main.pdf
molecular-dynamics-simulation,Command line interface for MDAnalysis
Organization: mdanalysis
Home Page: https://mdacli.readthedocs.io/
molecular-dynamics-simulation,MDAnalysis is a Python library to analyze molecular dynamics simulations.
Organization: mdanalysis
Home Page: https://mdanalysis.org
molecular-dynamics-simulation,MDAnalysis tool to calculate membrane curvature.
Organization: mdanalysis
Home Page: https://membrane-curvature.readthedocs.io/
molecular-dynamics-simulation,Python bindings for TNG file format
Organization: mdanalysis
Home Page: http://mdanalysis.org/pytng
molecular-dynamics-simulation,:zap: general purpose coarse-grained molecular dynamics simulation package
Organization: mjolnir-md
Home Page: https://mjolnir-md.github.io/Mjolnir/
molecular-dynamics-simulation,Educational materials for, and related to, UC Irvine's Drug Discovery Computing Techniques course (PharmSci 175/275), currently taught by David Mobley.
Organization: mobleylab
molecular-dynamics-simulation,MolSSI SARS-CoV-2 Biomolecular Simulation Data and Algorithm Store
Organization: molssi
Home Page: https://covid.molssi.org
molecular-dynamics-simulation,Sarkas Python MD suite for Dense Plasmas Physics
Organization: murillo-group
Home Page: https://murillo-group.github.io/sarkas/
molecular-dynamics-simulation,:computer: Build hydrogen atoms from united-atom molecular dynamics of lipids and calculate the order parameters.
User: patrickfuchs
Home Page: https://buildh.readthedocs.io/
molecular-dynamics-simulation,Full automation of relative protein-ligand binding free energy calculations in GROMACS
Organization: protocaller
Home Page: http://protocaller.readthedocs.io
molecular-dynamics-simulation,RadonPy is a Python library to automate physical property calculations for polymer informatics.
Organization: radonpy
molecular-dynamics-simulation,To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories.
User: rjdkmr
Home Page: http://do-x3dna.readthedocs.io
molecular-dynamics-simulation,PCA and normal mode analysis of proteins
Organization: rubi-za
molecular-dynamics-simulation,A differentiable simulator for scientific machine learning (SciML) with N-body problems, including astrophysical and molecular dynamics
Organization: sciml
Home Page: https://docs.sciml.ai/NBodySimulator/stable/
molecular-dynamics-simulation,Molecular dynamics simulation software
Organization: senpai-molecular-dynamics
Home Page: https://senpaimd.org
molecular-dynamics-simulation,blend molecules!
User: smparker
molecular-dynamics-simulation,Python library for reading, writing, and converting computational chemistry file formats and generating input files.
Organization: theochem
Home Page: https://iodata.readthedocs.io/en/latest/index.html
molecular-dynamics-simulation,PyRod - Tracing water molecules in molecular dynamics simulations
Organization: wolberlab
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