Topic: mass-spectrometry Goto Github
Some thing interesting about mass-spectrometry
Some thing interesting about mass-spectrometry
mass-spectrometry,Fast and Accurate CE-, GC- and LC-MS(/MS) Data Processing
Organization: autoflowresearch
mass-spectrometry,Python package for efficient mass spectrometry data processing and visualization
User: bittremieux
Home Page: https://spectrum-utils.readthedocs.io/
mass-spectrometry,SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
Organization: boecker-lab
mass-spectrometry,sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java
Organization: boecker-lab
mass-spectrometry,Public Workflows at GNPS
Organization: ccms-ucsd
Home Page: https://gnps.ucsd.edu/
mass-spectrometry,Molecular mass calculations
User: cgohlke
Home Page: https://pypi.org/project/molmass
mass-spectrometry,Mass spectrometry data visualization
User: chhh
Home Page: https://batmass.org
mass-spectrometry, A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
Organization: compomics
mass-spectrometry,LC-MS data processing tool for large-scale metabolomics experiments.
Organization: elucidatainc
Home Page: https://resources.elucidata.io/elmaven/
mass-spectrometry,CoreMS is a comprehensive mass spectrometry software framework
Organization: emsl-computing
mass-spectrometry,Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package
Organization: fgcz
Home Page: https://bioconductor.org/packages/rawDiag
mass-spectrometry,Access Orbitrap data in R lang using C# mono assembly - bioconductor package
Organization: fgcz
Home Page: https://bioconductor.org/packages/rawrr/
mass-spectrometry,Thermo MSFileReader Python bindings
User: frallain
mass-spectrometry,TidyMS: Tools for working with MS data in untargeted metabolomics
User: griquelme
mass-spectrometry,Word2Vec based similarity measure of mass spectrometry data.
Organization: iomega
mass-spectrometry,Picotti lab data analysis package.
User: jpquast
Home Page: https://jpquast.github.io/protti/
mass-spectrometry,Proteomics search & quantification so fast that it feels like magic
User: lazear
Home Page: https://sage-docs.vercel.app
mass-spectrometry,Base Classes and Functions for Mass Spectrometry and Proteomics
User: lgatto
Home Page: http://lgatto.github.io/MSnbase/
mass-spectrometry,Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
User: lgatto
Home Page: http://lgatto.github.io/RforProteomics
mass-spectrometry,An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
Organization: mannlabs
Home Page: https://mannlabs.github.io/alphamap/
mass-spectrometry,A modular, python-based framework for mass spectrometry. Powered by nbdev.
Organization: mannlabs
Home Page: https://mannlabs.github.io/alphapept/
mass-spectrometry,Python Package for the downstream analysis of mass-spectrometry-based proteomics data
Organization: mannlabs
Home Page: https://alphapeptstats.readthedocs.io/en/latest/
mass-spectrometry,An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.
Organization: mannlabs
Home Page: https://doi.org/10.1016/j.mcpro.2021.100149
mass-spectrometry,Official repository of open data MassBank records
Organization: massbank
mass-spectrometry,Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.
Organization: matchms
mass-spectrometry,Calculation and visualization of molecular networks based on t-SNE algorithm
Organization: metgem
Home Page: https://metgem.github.io
mass-spectrometry,A library for deisotoping and charge state deconvolution of complex mass spectra
User: mobiusklein
Home Page: https://mobiusklein.github.io/ms_deisotope
mass-spectrometry,The repo for LFQ-Analyst
Organization: monashbioinformaticsplatform
Home Page: https://bioinformatics.erc.monash.edu/apps/LFQ-Analyst/
mass-spectrometry,A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
Organization: nesvilab
Home Page: http://fragpipe.nesvilab.org
mass-spectrometry,Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
Organization: nesvilab
Home Page: https://msfragger.nesvilab.org
mass-spectrometry,PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
Organization: nesvilab
Home Page: https://philosopher.nesvilab.org
mass-spectrometry,Identify and quantify MHC eluted peptides from mass spectrometry raw data
Organization: nf-core
Home Page: https://nf-co.re/mhcquant
mass-spectrometry,Protein Identification with Deep Learning
User: nh2tran
mass-spectrometry,Visualization and Analysis of mass spectrometric and chromatographic data.
Organization: openchrom
Home Page: https://www.openchrom.net
mass-spectrometry,The codebase of the OpenMS project
Organization: openms
Home Page: https://www.openms.de
mass-spectrometry,pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning
Organization: pfindstudio
mass-spectrometry,The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data.
Organization: pmartr
Home Page: https://pmartr.github.io/pmartR/
mass-spectrometry,Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data
Organization: pnnl-comp-mass-spec
mass-spectrometry,.NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific
Organization: pnnl-comp-mass-spec
mass-spectrometry,Community-curated tutorials and datasets for ML in proteomics
Organization: proteomicsml
Home Page: https://www.proteomicsml.org
mass-spectrometry,pymzML - an interface between Python and mzML Mass spectrometry Files
Organization: pymzml
Home Page: https://pymzml.readthedocs.io/en/latest/
mass-spectrometry,Quantum mechanic mass spectrometry calculation program
Organization: qcxms
Home Page: https://xtb-docs.readthedocs.io/en/latest/qcxms_doc/qcxms.html
mass-spectrometry,Low level infrastructure to handle MS spectra
Organization: rformassspectrometry
Home Page: https://rformassspectrometry.github.io/Spectra/
mass-spectrometry,Workflow solutions for mass-spectrometry based non-target analysis.
User: rickhelmus
Home Page: https://rickhelmus.github.io/patRoon/
mass-spectrometry,Quantitative Analysis of Mass Spectrometry Data
User: sgibb
Home Page: https://strimmerlab.github.io/software/maldiquant/
mass-spectrometry,This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
User: sneumann
mass-spectrometry,Infer metabolic directions from moment differences of mass-weighted intensity distributions
User: tubanlee
Home Page: https://doi.org/10.5281/zenodo.10616979
mass-spectrometry,Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
Organization: ursgal
mass-spectrometry,A deep learning toolkit for mass spectrometry
User: wfondrie
Home Page: https://wfondrie.github.io/depthcharge/
mass-spectrometry,Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.
User: xieguigang
Home Page: https://mzkit.org
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