Topic: bioconductor Goto Github
Some thing interesting about bioconductor
Some thing interesting about bioconductor
bioconductor,Accurate sample inference from amplicon data with single nucleotide resolution
User: benjjneb
Home Page: http://benjjneb.github.io/dada2/
bioconductor,karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
User: bernatgel
Home Page: https://bernatgel.github.io/karyoploter_tutorial/
bioconductor,MaAsLin2: Microbiome Multivariate Association with Linear Models
Organization: biobakery
Home Page: http://huttenhower.sph.harvard.edu/maaslin2
bioconductor,Docker Containers for Bioconductor - NEW!
Organization: bioconductor
Home Page: https://bioconductor.org/help/docker/
bioconductor,Stickers for some Bioconductor packages - feel free to contribute and/or modify.
Organization: bioconductor
bioconductor,Contribute Packages to Bioconductor
Organization: bioconductor
bioconductor,Provide R access to the NCI Genomic Data Commons portal.
Organization: bioconductor
Home Page: http://bioconductor.github.io/GenomicDataCommons/
bioconductor,tidy processing of biological sequences in R
Organization: biogenies
Home Page: https://BioGenies.github.io/tidysq/
bioconductor,Materials on the analysis of microarray expression data; focus on re-analysis of public data ( http://tinyurl.com/cruk-microarray)
Organization: bioinformatics-core-shared-training
Home Page: http://bioinformatics-core-shared-training.github.io/microarray-analysis
bioconductor,A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor
Organization: bioinformatics-core-shared-training
Home Page: http://bioinformatics-core-shared-training.github.io/ngs-in-bioc/
bioconductor,TCGAbiolinks
Organization: bioinformaticsfmrp
Home Page: http://bioconductor.org/packages/devel/bioc/vignettes/TCGAbiolinks/inst/doc/index.html
bioconductor,TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/
Organization: bioinformaticsfmrp
Home Page: http://bioinformaticsfmrp.github.io/TCGAbiolinksGUI
bioconductor,TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
Organization: bioinformaticsfmrp
bioconductor,Tools for manipulating annotated data matrices
Organization: cmap
bioconductor,π RDocumentation provides an easy way to search the documentation for every version of every R package on CRAN and Bioconductor.
Organization: datacamp
Home Page: https://rdocumentation.org
bioconductor,Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.
User: drisso
bioconductor,Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
User: federicomarini
Home Page: https://federicomarini.github.io/GeneTonic
bioconductor,pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
User: federicomarini
Home Page: https://federicomarini.github.io/pcaExplorer/
bioconductor,Reference-guided transcript discovery and quantification for long read RNA-Seq data
Organization: goekelab
bioconductor,R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
User: kdkorthauer
bioconductor,Automate package and project setup for Bioconductor packages
User: lcolladotor
Home Page: https://lcolladotor.github.io/biocthis/
bioconductor,Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches
User: lcolladotor
Home Page: http://lcolladotor.github.io/derfinder
bioconductor,R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
Organization: leekgroup
Home Page: https://jhubiostatistics.shinyapps.io/recount/
bioconductor,Base Classes and Functions for Mass Spectrometry and Proteomics
User: lgatto
Home Page: http://lgatto.github.io/MSnbase/
bioconductor,Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
User: lgatto
Home Page: http://lgatto.github.io/RforProteomics
bioconductor,Code for the spatialLIBD R/Bioconductor package and shiny app
Organization: lieberinstitute
Home Page: http://LieberInstitute.github.io/spatialLIBD/
bioconductor,Clone of the Bioconductor repository for the SingleR package.
User: ltla
Home Page: https://bioconductor.org/packages/devel/bioc/html/SingleR.html
bioconductor,Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
User: mhahsler
bioconductor,Microbiome analysis
Organization: microbiome
Home Page: https://microbiome.github.io/mia/
bioconductor,Orchestrating Microbiome Analysis
Organization: microbiome
Home Page: https://microbiome.github.io/OMA
bioconductor,Bioconductor cheat sheet
User: mikelove
bioconductor,Development repository for the Bioconductor package 'mixOmics '
User: mixomicsteam
Home Page: http://mixomics.org/
bioconductor,π Molecular informatics toolkit with integration of bioinformatics and cheminformatics tools for drug discovery
User: nanxstats
Home Page: https://nanx.me/Rcpi/
bioconductor,𧬠o r t h o g e n e π§¬β¨β¨β¨β¨β¨β¨β¨ Interspecies gene mappingβ¨β¨β¨β¨β¨ π¦ π π± π π³ π π π π π πͺ± π πͺ° π π π π¦ π π π π¦ π π π π π π π π π π π π π π π π π 𦧠π π¦ π πββοΈ
Organization: neurogenomics
Home Page: https://doi.org/doi:10.18129/B9.bioc.orthogene
bioconductor,Continuous integration for R packages. π Automates testing β , documentation website building π¦, & containerised deployment π³.
Organization: neurogenomics
Home Page: https://neurogenomics.github.io/rworkflows/
bioconductor,Simple simulation of single-cell RNA sequencing data
Organization: oshlack
bioconductor,From geospatial to spatial -omics
Organization: pachterlab
Home Page: https://pachterlab.github.io/voyager/
bioconductor,A R framework for pipeline benchmarking, with application to single-cell RNAseq
User: plger
Home Page: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02136-7
bioconductor,Multiview Intercellular SpaTial modeling framework
Organization: saezlab
Home Page: https://saezlab.github.io/mistyR/
bioconductor,The bridge between the NCBI Gene Expression Omnibus and Bioconductor
User: seandavi
Home Page: http://seandavi.github.io/GEOquery
bioconductor,Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources
User: seandavi
Home Page: https://seandavi.github.io/wdlRunR
bioconductor,This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
User: sneumann
bioconductor,Brings bulk and pseudobulk transcriptomics to the tidyverse
User: stemangiola
bioconductor,A small project to add ggplot2 extensions
User: teunbrand
Home Page: https://teunbrand.github.io/ggnomics/
bioconductor,Convert between AnnData and SingleCellExperiment
Organization: theislab
Home Page: https://icb-anndata2ri.readthedocs-hosted.com/
bioconductor,Conversion between scRNA-seq objects
Organization: theislab
Home Page: https://theislab.github.io/zellkonverter/
bioconductor,Transcript quantification import for modular pipelines
Organization: thelovelab
bioconductor,A grammar of genomic data transformation
Organization: tidyomics
Home Page: https://tidyomics.github.io/plyranges/
bioconductor,Curated Metagenomic Data of the Human Microbiome
Organization: waldronlab
Home Page: https://waldronlab.io/curatedMetagenomicData
bioconductor,Bioconductor package for management of multi-assay data
Organization: waldronlab
Home Page: https://waldronlab.io/MultiAssayExperiment/
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