Topic: transcriptome Goto Github
Some thing interesting about transcriptome
Some thing interesting about transcriptome
transcriptome,Merging, Annotation, Validation, and Illustration of Structural variants
Organization: bcgsc
Home Page: http://mavis.bcgsc.ca
transcriptome,Nanopore sequence read simulator
Organization: bcgsc
transcriptome,de novo assembly of RNA-seq data using ABySS
Organization: bcgsc
transcriptome,Escherichia coli Transcriptome Assembly from a Compendium of RNA-seq Data Sets
User: btjaden
transcriptome,A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
User: cfarkas
transcriptome,Mirror of Bioconductor's CAGEr package repository
User: charles-plessy
Home Page: https://bioconductor.org/packages/CAGEr
transcriptome,Various tutorials on how to analyse transcriptomic data.
User: charles-plessy
transcriptome,RepeatMasker Trinity based Parse Script
User: clbutler
transcriptome,π π£ π± Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Organization: combine-lab
Home Page: https://combine-lab.github.io/salmon
transcriptome,Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
Organization: comprna
transcriptome,RefEx: a reference gene expression dataset of mammalian tissues and cell lines measured by different methods
Organization: dbcls
Home Page: https://refex.dbcls.jp/
transcriptome,Evolutionary Transcriptomics with R
Organization: drostlab
Home Page: https://drostlab.github.io/myTAI/
transcriptome,This repository contains CWL descriptions of the various tools which will allow you to build workflows for the annotation of transcripts
Organization: ebi-metagenomics
Home Page: https://www.elixir-europe.org/
transcriptome,GET_HOMOLOGUES: a versatile software package for pan-genome analysis
User: eead-csic-compbio
transcriptome,Genome Annotation Without Nightmares
User: enormandeau
transcriptome,Demultiplexing and debarcoding tool designed for LR-Split-seq data.
User: fairliereese
transcriptome,Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
User: federicomarini
Home Page: https://federicomarini.github.io/GeneTonic
transcriptome,pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
User: federicomarini
Home Page: https://federicomarini.github.io/pcaExplorer/
transcriptome,
Organization: fraenkel-lab
Home Page: https://fraenkel-lab.github.io/GarNet/
transcriptome,Neural signal propagation atlas (Randi et al.), genome (WormBase), single-cell transcriptome (Taylor et al.), neuropeptide/GPCR deorphanization (Beets et al.), monoaminergic connectome (Bentley et al.), and chemical-synapse sign predictions (Fenyves et al.) all in one place. Read the docs: https://francescorandi.github.io/wormneuroatlas/
User: francescorandi
transcriptome,Building classifiers using cancer transcriptomes across 33 different cancer-types
Organization: greenelab
transcriptome,Merge transcriptome read-to-genome alignments into non-redundant transcript models
Organization: guigolab
transcriptome,TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data
User: hr1912
transcriptome,Software for measuring poly(A) tail length and 3β²-end modifications using a high-throughput sequencer
User: hyeshik
transcriptome,Workflow for prOteome and tRanScriptome functiOnal aNnotation. CAUTION : project has moved to Gitlab.
Organization: ifremer-bioinformatics
Home Page: https://gitlab.ifremer.fr/bioinfo/workflows/orson
transcriptome,A highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning.
User: iyhaoo
transcriptome,TrendCatcher is an open source R-package that allows users to systematically analyze and visualize time course data. Please cite "Temporal transcriptomic analysis using TrendCatcher identifies early and persistent neutrophil activation in severe COVID-19" by Xinge Wang et al published in JCI Insight (2022) - https://insight.jci.org/articles/view/157255
User: jaleesr
transcriptome,AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data
User: jingwyang
Home Page: https://github.com/jingwyang/AnceTran
transcriptome,Snakemake workflow to run transdecoder + trinotate
User: jlanga
transcriptome,The START App: R Shiny Transcriptome Analysis Resource Tool
User: jminnier
Home Page: https://kcvi.shinyapps.io/START/
transcriptome,Derives consensus sequences from a set of long noisy reads by clustering and error correction.
User: ksahlin
transcriptome,De novo clustering of long transcript reads into genes
User: ksahlin
transcriptome,orthomap is a python package to extract orthologous maps (in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Orthomap results (gene ages per orthogroup) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.
User: kullrich
transcriptome,Code for MERFISH analysis
User: lhqing
transcriptome,A Python library to visualize and analyze long-read transcriptomes
Organization: mortazavilab
Home Page: https://freese.gitbook.io/swan/
transcriptome,Technology agnostic long read analysis pipeline for transcriptomes
Organization: mortazavilab
transcriptome,Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility and cis-regulatory chromatin contacts.
Organization: nf-core
Home Page: https://nf-co.re/hicar
transcriptome,An application for exploring and visualizing differential gene expression data created with DESeq2
User: pblumenkamp
transcriptome,Targeted reduction of highly abundant transcripts with pseudo-random primers
Organization: population-transcriptomics
transcriptome,get chloroplast and mitochondrial genes from contigs of genome-skimming or transcriptome data
User: quxiaojian
transcriptome,
User: segalmicrobiomelab
transcriptome,A collection of custom scripts used in the placenta transcriptome paper, Gong et al. Nat Comm, 2021
User: sung
Home Page: https://www.obgyn.cam.ac.uk/placentome/
transcriptome,Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits
User: tjiagom
transcriptome,Deconvolution of transcriptome through Immune Component Analysis
User: urszulaczerwinska
Home Page: https://urszulaczerwinska.github.io/DeconICA/
transcriptome,SondovaΔ is a script to create orthologous low-copy nuclear probes from transcriptome and genome skim data for target enrichment. For latest version check "releases".
User: v-z
Home Page: https://github.com/V-Z/sondovac/wiki/
transcriptome,Massively Parallel RNA-seq Project
Organization: wormlabcaltech
transcriptome,We use two kinds of neural networks: Multilayer Perceptron (MLP) and Recurrent Neural Network (RNN) to predict the single-cell cycle stage based on transcriptome data.
User: xiangyue9607
transcriptome,De nove assembly and annotation of Fragilaria radians transcriptome
User: yuragal
transcriptome,Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
User: zjufanlab
Home Page: https://www.sciencedirect.com/science/article/pii/S2589004220300663
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