Topic: kmer Goto Github
Some thing interesting about kmer
Some thing interesting about kmer
kmer,Collapse a set of redundant kmers to use IUPAC degenerate bases
User: alexpreynolds
kmer,Count kmers with a more efficient (faster) hash table
User: alexpreynolds
kmer,Count canonical kmers with Abseil C++ `absl::flat_hash_map`
User: alexpreynolds
kmer,A fast and accurate tool for genotyping haploid individuals (such as SARS-CoV-2)
Organization: algolab
Home Page: https://algolab.github.io/MALVIRUS
kmer,Rust implementation of ekg's dozyg
Organization: algolab
kmer,Predict plasmids from uncorrected long read data
User: andrewjpage
kmer,k-mer similarity metrics for two fastx files
User: angelovangel
kmer,Fast K-mer counting in Julia
User: antonoresten
Home Page: https://anton083.github.io/VectorizedKmers.jl/
kmer,K-mer counting algorithms and count-data utilities for the BioJulia framework
Organization: biojulia
kmer,Playing around with kmers very fast!
User: carrascomj
kmer,Context aware Move To Front Transform based compressor
User: davidepianca98
kmer,HyperLogLog en C++ y OpenMP para cálculo de similitud de genomas mediante índice de Jaccard
User: esalini22
kmer,🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies
Organization: iqtlabs
Home Page: http://freqgen.readthedocs.io/
kmer,Fast and space-efficient taxonomic classification of long reads
User: jensuweulrich
kmer,DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
User: jerryji1993
Home Page: https://doi.org/10.1093/bioinformatics/btab083
kmer,Fast k-mer based tool for multi locus sequence typing (MLST)
Organization: jordanlab
kmer,Decompose a k-mer profile into several peaks each representing a copy number.
User: jzhang-dev
kmer,Inference of ploidy and heterozygosity structure using whole genome sequencing data
User: kamilsjaron
kmer,An efficient kmer data structure for genomic applications.
User: masakistan
kmer,De novo genome assembly and multisample variant calling
Organization: mcveanlab
Home Page: https://github.com/mcveanlab/mccortex/wiki
kmer,FOCUS: An Agile Profiler for Metagenomic Data
User: metageni
kmer,A C and Python implementation of latent strain analysis for eigengenome partitioning.
User: mooreryan
kmer, k-mer similarity analysis pipeline
Organization: nf-core
Home Page: https://nf-co.re/kmermaid
kmer,Generate unique KMERs for every contig in a FASTA file
Organization: opengene
kmer,βHΞDI (Biomarker-based Heuristic Engine for Dengue Identification) is a computational tool designed for the identification of Dengue virus serotypes in wastewater next-generation sequencing data.
User: pranjalpruthi
Home Page: https://amr.igib.res.in/bhedi/
kmer,A kmer-based homology searching tool
User: qile0317
Home Page: https://qile0317.github.io/KmerGMA.jl/stable/
kmer,Benchmark of hashing k-mers in Golang
User: shenwei356
kmer,Accurate metagenomic profiling && Fast large-scale sequence/genome searching
User: shenwei356
Home Page: https://bioinf.shenwei.me/kmcp
kmer,A k-mer serialization package for Golang
User: shenwei356
kmer,A versatile toolkit for k-mers with taxonomic information
User: shenwei356
Home Page: https://bioinf.shenwei.me/unikmer
kmer,fast and comprehensive k-mer counting package
User: slowikj
Home Page: https://slowikj.github.io/seqR/
kmer,Quickly search, compare, and analyze genomic and metagenomic data sets.
Organization: sourmash-bio
Home Page: http://sourmash.readthedocs.io/en/latest/
kmer,A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
User: suchapalaver
kmer,Bioinformatics 101 tool for counting unique k-length substrings in DNA
User: suchapalaver
kmer,SuperSampler, an efficient scaled size sketching and sketch comparison tool
User: timrouze
kmer,A simple app to aid writing
User: tkonopka
Home Page: https://tkonopka.github.io/writingstats/
kmer,instructions, python and R code for generating lava lamp plots of kmer coverage
User: wrf
kmer,Phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.
User: zhangrengang
Home Page: https://doi.org/10.1111/nph.18173
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