Topic: k-mers Goto Github
Some thing interesting about k-mers
Some thing interesting about k-mers
k-mers,A method for variant graph genotyping based on exact alignment of k-mers
Organization: bioinformatics-centre
k-mers,Projet GENOM master 2 BIM : 2022 - 2023 Projet de bio-informatique sur les k-mers codΓ© en Python
User: damienlegros
k-mers,A compressor for k-mers sets with counters
User: enricorox
k-mers,a molecular solutions toolbox for molecular biologists.
User: eskutkaan-zz
Home Page: https://eskutkaan.github.io/biodata/
k-mers,Excess variance in k-mer spectra
User: hannesbecher
k-mers,Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)
User: hannesbecher
k-mers,simple virus DNA classification
User: hoseinlook
k-mers,Evaluation tools for "A performant bridge between fixed-size and variable-size seeding"
Organization: itbe-lab
k-mers,Mutation table of COVID-19 virus genome with all possible substitution mutations and corresponding 20-mers for mutation identification
User: jenetic
k-mers,Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
User: jermp
k-mers,Client for downloading and a phylogenetic decompression of the BIGSIdata de Bruijn graphs
User: karel-brinda
Home Page: http://brinda.eu/mof
k-mers,Phylogenetic compression of extremely large genome collections [661k βππ²ππΆπ | BIGSIdata βπ°π΄ππΆπ | AllTheBact'23 βπ³π±ππΆπ]
User: karel-brinda
Home Page: https://brinda.eu/mof
k-mers,Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
User: karel-brinda
Home Page: http://brinda.eu/mof
k-mers,Supplementary repository for "Efficient and robust search of microbial genomes via Phylogenetic Compression"
User: karel-brinda
Home Page: http://karel-brinda.github.io/mof
k-mers,Project for the course of Bioinformatics - University of Padua.
User: leonardogemin
k-mers,High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
User: liaoherui
Home Page: https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-023-01615-w
k-mers,A k-mer counter that streams gene-cluster specific k-mers, while keeping k-mer positional information. Useful for microbial GWAS analyses with higher interpretability.
Organization: microbial-pangenomes-lab
k-mers,Source files created during the Master's Thesis
User: oliadikan
k-mers,KmerCamelπ« provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.
User: ondrejsladky
k-mers,Minimiser-based digital normalisation for long-read DNA sequence datasets
User: peteashton
k-mers,ProphAsm β a rapid computation of simplitigs directly from k-mer sets
Organization: prophyle
k-mers,ProPhex β an exact k-mer index using Burrows-Wheeler Transform
Organization: prophyle
k-mers,Accurate, resource-frugal and deterministic DNA sequence classifier.
Organization: prophyle
Home Page: https://prophyle.github.io
k-mers,Phage-Host Interaction Search Tool
Organization: refresh-bio
k-mers,web application for DNA comparison, alignment and phylogenetic tree. Released on 2020.
User: sirinefoudili
k-mers,Indexing & querying large assembly graphs -- in space, no one can hear you miao!
Organization: spacegraphcats
Home Page: https://spacegraphcats.github.io/spacegraphcats/
k-mers,counts k-mers, written in rust
User: suchapalaver
k-mers,Get Started with DNA Sequencing working with .FastQ and .FastA file formats and performing Pattern Matching Algorithms (Exact & Approximate).
User: visheshsinha
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