Topic: k-mer Goto Github
Some thing interesting about k-mer
Some thing interesting about k-mer
k-mer,Polymorphic Edge Detection - An efficient polymorphism detector for NGS data
User: akiomiyao
k-mer,Learn interpretable computational phenotyping models from k-merized genomic data
User: aldro61
Home Page: http://aldro61.github.io/kover/
k-mer,PopPUNK ๐จโ๐ค (POPulation Partitioning Using Nucleotide Kmers)
Organization: bacpop
Home Page: https://www.bacpop.org/poppunk
k-mer,Split k-mer analysis โ version 2
Organization: bacpop
Home Page: https://docs.rs/ska/latest/ska/
k-mer,Unique sequence search by K-mer exclusion
User: berybox
k-mer,A method for creating a dictionary of all k-mer abundances within a fasta file along with their corresponding Godel numbers.
Organization: biodataanalysisgroup
k-mer,Predicts anticancer peptides using random forests trained on the n-gram encoded peptides. The implemented algorithm can be accessed from both the command line and shiny-based GUI.
Organization: biogenies
Home Page: https://biogenies.github.io/CancerGram/
k-mer,Scripts for discovery and genotyping polymorphic Alu element insertions in human genomes
User: bioinfo-ut
k-mer,ultrafast genome querying and taxonomic profiling for metagenomic samples by abundance-corrected minhash.
User: bluenote-1577
k-mer,๐งน๐ฆท aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets
User: camiladuitama
k-mer,๐๏ธ๐ฆท decOM ๐ฆท๐๏ธ
User: camiladuitama
k-mer,Telomeric Repeat motif Identification tool with Short-read sequencing
User: chemical118
k-mer,Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.
Organization: deepomicslab
k-mer,Remove contaminated contigs from genomes using k-mers and taxonomies.
Organization: dib-lab
k-mer,In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
Organization: dib-lab
Home Page: http://khmer.readthedocs.io/
k-mer,Mutation table of COVID-19 virus genome with all possible substitution mutations and corresponding 20-mers for mutation identification
User: jenetic
k-mer,A compressed, associative, exact, and weighted dictionary for k-mers.
User: jermp
k-mer,subset and spaced seed design tool
User: laurentnoe
Home Page: https://bioinfo.univ-lille.fr/yass/iedera.php
k-mer,An RNA virus strain-level identification tool for short reads.
User: liaoherui
Home Page: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02609-x
k-mer,This repository contains the results and comparison visualization of circRNA candidates detected by circRNA prediction softwares.
User: luffy563
k-mer,K-mer spectrum corrector based on Hadoop
User: luislorenzom
k-mer,Python bioinformatics CLI for k-mer counts and de Bruijn graphs
User: matthewralston
Home Page: https://matthewralston.github.io/kmerdb
k-mer,๐งน aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets
User: md5sam
k-mer,SEER, reimplemented in python ๐๐ฎ
User: mgalardini
Home Page: http://pyseer.readthedocs.io
k-mer,Assembles a genome and finds true mutations among sequencing errors
User: mislavjaksic
k-mer, k-mer similarity analysis pipeline
Organization: nf-core
Home Page: https://nf-co.re/kmermaid
k-mer,ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
User: pirovc
Home Page: https://pirovc.github.io/ganon/
k-mer,Tool for indexing and querying back-splice junctions of circular RNAs (circRNAs) in RNA-Seq datasets
User: pmenzel
k-mer,K-mer indexing and querying in RNA-Seq data
User: pmenzel
k-mer,Files from DIMACS 2007 DNA barcoding challenge
User: rdmpage
k-mer,Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).
Organization: refresh-bio
k-mer,interactive Multi Objective K-mer Analysis
User: ritchielabigh
k-mer,simple desktop app that apply some of DNA searching algorithms, with easy use desktop GUI using Pyqt6 lib in python.
User: romanyn36
k-mer,A PHP hash table optimized for counting short gene sequences for use in Bioinformatics.
Organization: scien-ide
k-mer,This hackathon project aims to use a Convolutional Neural Network (CNN) to accurately identify promoter classes for DNA sequencing, leveraging spatial pattern recognition to enhance genetic analysis.
User: sean-atkinson
k-mer,A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
Organization: seqan
Home Page: https://seqan-raptor.vercel.app/
k-mer,Benchmark of hashing k-mers in Golang
User: shenwei356
k-mer,a versatile toolkit for k-mers with taxonomic information
User: shenwei356
Home Page: https://bioinf.shenwei.me/unikmer
k-mer,fast and comprehensive k-mer counting package
User: slowikj
Home Page: https://slowikj.github.io/seqR/
k-mer,Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
Organization: steineggerlab
k-mer,counts k-mers, written in rust
User: suchapalaver
k-mer,Reference-free FASTQ filter for rare germline and somatic variants
User: tobiasrausch
k-mer,A simple python script that counts k-mer matches between reference database and query .fasta files, optionally returning all non-matching query sequences. Designed originally for sequencing adapter decontamination.
User: zheludev
k-mer,Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.
User: zmmason
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