Topic: population-genetics Goto Github
Some thing interesting about population-genetics
Some thing interesting about population-genetics
population-genetics,Rapid population clustering with autoencoders
Organization: ai-sandbox
population-genetics,Pinpoints the mutation favored by selection
User: alek0991
population-genetics,Utilities for analyzing next generation sequencing data.
Organization: angsd-wrapper
population-genetics,Genotype Representation Graph Library
Organization: aprilweilab
Home Page: https://grgl.readthedocs.io/
population-genetics,PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
Organization: bacpop
Home Page: https://www.bacpop.org/poppunk
population-genetics,VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format
Organization: bgi-shenzhen
population-genetics,An R package for reproducible and automated ADMIXTOOLS analyses
User: bodkan
Home Page: https://bodkan.net/admixr
population-genetics,Population genetic simulations in R 🌍
User: bodkan
Home Page: https://bodkan.net/slendr
population-genetics,LDlinkR
Organization: cbiit
population-genetics,LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. Each included application is specialized for querying and displaying unique aspects of linkage disequilibrium.
Organization: cbiit
Home Page: https://ldlink.nci.nih.gov
population-genetics,Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
Organization: chasewnelson
population-genetics,strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
User: ericarcher
population-genetics,Graph decorators for data and population structure visualization :octopus:
User: esteinig
population-genetics,A tool to visualize the haplotype pattern and various information in excel.
User: fengcong3
population-genetics,Scripts and code for Kākāpō genomic data
Organization: genomicsaotearoa
population-genetics,🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
Organization: grunwaldlab
Home Page: https://grunwaldlab.github.io/poppr
population-genetics,rhierbaps: R implementation of hierBAPS
User: gtonkinhill
population-genetics,Pipelines to run STRUCTURE using multiple front-ends (CLUMPAK+StrAuto, Structure_threader)
User: hernanmd
population-genetics,Multisample Variant Format ToolKit
User: jbpease
population-genetics,A small R notebook describing how plot common (aDNA) population genetics PCAs using R and the tidyverse.
User: jfy133
population-genetics,the hierfstat package
User: jgx65
population-genetics,Tools to work with variant call format files
User: knausb
population-genetics,feature-based deep learning for the identification of selective sweeps
Organization: kr-colab
population-genetics,deep learning prediction of geographic location from individual genome sequences
Organization: kr-colab
population-genetics,A library for working with phylogenetic and population genetic data.
User: lczech
Home Page: http://genesis-lib.org/
population-genetics,Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments
User: lczech
population-genetics,Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
User: lh3
population-genetics,An analysis and visualization platform for 'omics data
Organization: merenlab
Home Page: http://merenlab.org/software/anvio
population-genetics,Fast algorithms for computing XX^T for binary matrices
User: mklarqvist
population-genetics,Fast calculations of linkage-disequilibrium in large-scale human cohorts
User: mklarqvist
Home Page: https://mklarqvist.github.io/tomahawk/
population-genetics,A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.
Organization: moiexpositoalonsolab
Home Page: http://grene-net.org
population-genetics,Forward-time simulation in Python using fwdpp
User: molpopgen
Home Page: https://molpopgen.github.io/fwdpy11
population-genetics,A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Organization: nf-core
Home Page: https://nf-co.re/eager
population-genetics,A comprehensive platform for population-scale genomic analyses
User: nickzren
population-genetics,Repo to analyze population genetic data with many different methods
Organization: novembrelab
population-genetics,SNP genotyping in polyploids
User: pblischak
Home Page: http://pblischak.github.io/polyploid-genotyping
population-genetics,Causal Mixture Model for GWAS summary statistics
Organization: precimed
population-genetics,An open-source toolkit for large-scale genomic analysis
Organization: projectglow
Home Page: https://projectglow.io
population-genetics,An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
User: royfrancis
Home Page: http://royfrancis.github.io/pophelper/
population-genetics,starmie: plotting and inference for population structure models :star2:
User: sa-lee
population-genetics,Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
User: sanjaynagi
Home Page: https://sanjaynagi.github.io/rna-seq-pop/
population-genetics,Python package for detecting positive selective sweeps using time-series genomics sampling data.
Organization: schriderlab
Home Page: https://pypi.org/project/Timesweeper/
population-genetics,Application of pan-genome for population
User: starskyzheng
population-genetics,ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium
Organization: stephenslab
population-genetics,1000 Genomes Project Metadata R Package
User: stephenturner
Home Page: https://stephenturner.github.io/kgp/
population-genetics,Random scripts, mostly for dealing with RADseq data and DNA sequence alignments
User: tkchafin
population-genetics,A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
User: vinuesa
population-genetics,Fast Principal Component Analysis All in One
User: zilong-li
Home Page: https://genome.cshlp.org/content/33/9/1599
population-genetics,a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.
User: zilong-li
Home Page: https://doi.org/10.1093/bioinformatics/btae049
population-genetics,The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049
User: zilong-li
Home Page: https://zilong-li.github.io/vcfppR/
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