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achilles

Artificial neural networks for taxonomic nanopore signal classification in host microbiomes *update soon* :deciduous_tree:

admixtured3

Interactive Admixture Plots in D3

ardap

beastiary

Real time and remote trace inspection with BEASTIARY.

bioconda-recipes

Conda recipes for the bioconda channel.

brick

BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons :microbe:

brigad3

D3 and Vue component for visualization of bacterial genome assemblies from nanopore sequence data

ca-mrsa

Emergence of community-associated MRSA

cerebro

Metagenomic diagnostics stack for low abundance sample types and clinical reporting

chroma.js

JavaScript library for all kinds of color manipulations

conda-recipes

Recipes for Conda / Bioconda

cookiecutter

A command-line utility that creates projects from cookiecutters (project templates). E.g. Python package projects, jQuery plugin projects.

critter

BEAST models for pathogen transmission dynamics in Python

dartqc

Quality Control for DArT SNPs

docker-shields

Shields.io in a Docker image :whale:

docs

dorado

Oxford Nanopore's Basecaller

eager

A fully reproducible and state of the art ancient DNA analysis pipeline.

enabrowsertools

A collection of scripts to assist in the retrieval of data from the ENA Browser

fieldbioinformatics

ARTIC fieldbioinformatics modifications

gened3

Sequence Comparisons D3

geonet

Network Map Projections for R

github-markdown-toc

Easy TOC creation for GitHub README.md

icarust

Minimal implementation of Icarust for tinkering and learning [do not use]

insaflu

INSaFLU (“INSide the FLU”) is an influenza-oriented bioinformatics free web-based suite

japsa

Just Another JAva Package for Sequence Analysis

kleborate

krocus

lapdog

machine

Welcome to the Machine