Topic: phylogenetic-trees Goto Github
Some thing interesting about phylogenetic-trees
Some thing interesting about phylogenetic-trees
phylogenetic-trees,The Visualization Multitool for Molecular Epidemiology and Bioinformatics
User: aaboyles
Home Page: https://aaboyles.github.io/MicrobeTrace/
phylogenetic-trees,Using ggtree to build phylogenetic trees
User: agmcfarland
phylogenetic-trees,Python API for the Interactive Tree of Life (iTOL)
User: albertyw
phylogenetic-trees,High-quality circular representations of taxonomic and phylogenetic trees
Organization: biobakery
Home Page: https://segatalab.github.io/tools/graphlan
phylogenetic-trees,Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
Organization: biobakery
Home Page: https://huttenhower.sph.harvard.edu/phylophlan
phylogenetic-trees,The BioJulia package for working with phylogenetic trees and geneologies.
Organization: biojulia
phylogenetic-trees,REVOLVER - Repeated Evolution in Cancer
Organization: caravagnalab
Home Page: https://caravagnalab.github.io/revolver/
phylogenetic-trees,Program for simulating non-reversible DNA sequence evolution on a fixed bifurcating tree using trinucleotide context
Organization: chasewnelson
phylogenetic-trees,Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.
User: cmzmasek
Home Page: https://sites.google.com/site/cmzmasek/home/software/archaeopteryx-js
phylogenetic-trees,forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
User: cmzmasek
Home Page: https://sites.google.com/site/cmzmasek/home/software/forester
phylogenetic-trees,Comparative Genomics Toolkit 3
Organization: cogent3
Home Page: https://cogent3.org
phylogenetic-trees,rtrees: an R package to assemble phylogenetic trees from mega-trees
User: daijiang
Home Page: https://daijiang.github.io/rtrees/
phylogenetic-trees,Detection of outlier genes and species in phylogenomics
User: damiendevienne
Home Page: https://damiendevienne.github.io/phylter
phylogenetic-trees,SHOOT.bio - the phylogenetic search engine
User: davidemms
Home Page: https://www.shoot.bio
phylogenetic-trees,:deciduous_tree::man: An R package for manipulating phylogentic trees
User: dombennett
Home Page: https://github.com/DomBennett/treeman/wiki
phylogenetic-trees,Data and scripts for producing a Baysian phylogenetic tree sample of for the Indo-European family which is "good enough", using data from IELex (Dunn et al. 2011).
Organization: evotext
phylogenetic-trees,Phylogenetic trees in Julia
User: jangevaare
phylogenetic-trees,creating hybrid-gene phylogenetic trees for diversity analyses
User: jtfouquier
phylogenetic-trees,A simple treeviewer based on the R packages ape and phangorn.
User: klausvigo
phylogenetic-trees,A library for working with phylogenetic and population genetic data.
User: lczech
Home Page: http://genesis-lib.org/
phylogenetic-trees,A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)
User: lkremer
phylogenetic-trees,showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
User: lkremer
phylogenetic-trees,Community Finding with Applications on Phylogenetic Networks
User: luisdrita
Home Page: https://mscthesis.herokuapp.com
phylogenetic-trees,Cultivate your multiple sequence alignments to get better trees
Organization: mdu-phl
phylogenetic-trees,Super snazzy online phylogenetic tree viewer with automatic customization using simple, tab-separated text files.
User: mooreryan
Home Page: https://www.iroki.net
phylogenetic-trees,NOTE: The iroki command line tool is no longer maintained. Please see: https://github.com/mooreryan/iroki
User: mooreryan
phylogenetic-trees,A tool for plotting CAFE5 gene family expansion/contraction result
User: moshi4
phylogenetic-trees,Simple phylogenetic tree visualization python package for phylogenetic analysis
User: moshi4
Home Page: https://moshi4.github.io/phyTreeViz/
phylogenetic-trees,Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
User: moshi4
Home Page: https://moshi4.github.io/pyCirclize/
phylogenetic-trees,R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)
User: ms609
Home Page: https://ms609.github.io/Quartet/
phylogenetic-trees,Calculate distances between phylogenetic trees in R
User: ms609
Home Page: https://ms609.github.io/TreeDist/
phylogenetic-trees,Create, modify and analyse phylogenetic trees in R
User: ms609
Home Page: https://ms609.github.io/TreeTools/
phylogenetic-trees,Incremental building of phylogenetic distance tree
Organization: ncbi
phylogenetic-trees,Make phylogenetic trees and lineages from the NCBI Taxonomy database
User: picani
phylogenetic-trees,Species Counting on Reference trees viA Phylogenetic Placements
User: pierrebarbera
phylogenetic-trees,Tools for handling phylogenetic or genealogic trees with Julia. Mainly serves as a dependency for my other package TreeKnit
User: pierrebarrat
phylogenetic-trees,Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs
User: plantdr430
phylogenetic-trees,python Circos
User: ponnhide
phylogenetic-trees,We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original representation itself, thus requiring no prior training data.
User: ramithuh
Home Page: https://openreview.net/forum?id=K27V4MUYjV
phylogenetic-trees,Taxonomic trees (cladograms) from Wikipedia-scraped data.
User: shanedrabing
phylogenetic-trees,A tool for the spatial analysis of diversity
User: shawnlaffan
Home Page: http://shawnlaffan.github.io/biodiverse/
phylogenetic-trees,Light phylogeny API for Rust
User: simonpenel
phylogenetic-trees,Drawing reconciled phylogenetic trees allowing 1, 2 or 3 reconcillation levels
User: simonpenel
phylogenetic-trees,Repository for the R nLTT package
User: thijsjanzen
phylogenetic-trees,R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
User: v-z
Home Page: https://trapa.cz/en/course-molecular-data-r-2022
phylogenetic-trees,Interactive viewer of phylogenetic trees
Organization: veg
Home Page: http://phylotree.hyphy.org
phylogenetic-trees,Phylogenetic tree viewer based on D3.js
Organization: vibbits
Home Page: https://phyd3.bioinformatics-core.sites.vib.be
phylogenetic-trees,A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
User: vinuesa
phylogenetic-trees,:christmas_tree:Visualization and annotation of phylogenetic trees
Organization: yulab-smu
Home Page: https://yulab-smu.top/treedata-book/
phylogenetic-trees,:seedling: Base Classes and Functions for Phylogenetic Tree Input and Output
Organization: yulab-smu
Home Page: https://yulab-smu.top/treedata-book/
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