Topic: microbial-ecology Goto Github
Some thing interesting about microbial-ecology
Some thing interesting about microbial-ecology
microbial-ecology,Sup. Table 1 from Rodríguez-Gijón and Nuy et al., 2022 (Front. in Microbiology)
User: alejandrorgijon
Home Page: https://doi.org/10.3389/fmicb.2021.761869
microbial-ecology,Comparative Metatranscriptomics Workflow
User: anwarmz
microbial-ecology,Agricultural practices in cropland, like soil tillage and fertilizer applications, profoundly alter soil physical and chemical properties over time.
User: bglarkin
microbial-ecology,Application of DEMENTpy to a climate gradient in Southern California
User: bioatmosphere
microbial-ecology,This is a repository with my commonly-shared scripts.
User: bmcgivern13
microbial-ecology,EukRef PR2
Organization: carpentries-incubator
Home Page: https://carpentries-incubator.github.io/eukref_pr2/
microbial-ecology,Interactive and evolving catalogue of microbial interactions based on the framework of Pacheco and Segrè (2019)
User: cpauvert
Home Page: https://cpauvert.github.io/mi-atlas
microbial-ecology,My personal research website
User: danielsprockett
Home Page: https://danielsprockett.github.io/
microbial-ecology,Easy-to-use tool facilitating work with Mothur.
User: dizak
Home Page: https://dizak.github.io/mothulity
microbial-ecology,All data and code associated with Welter et al. 2020
User: dkwelter
microbial-ecology,A metadata schema for the Minimum Information about Intermicrobial Interaction Data (MIIID) using LinkML
Organization: fair-mi
Home Page: https://fair-mi.github.io/miiid-schema/
microbial-ecology,:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
User: franciscozorrilla
Home Page: https://franciscozorrilla.github.io/metaGEM/
microbial-ecology,A simple script to detect chimeric sequences in 16S/18S metagenomic samples.
User: genomicamicrob
microbial-ecology,Description of the metagenomic pipeline we have for analysis of 16S and 18S amplicon NGS
User: genomicamicrob
microbial-ecology,Super fast script for classifying metagenomic 16S/18S sequences
User: genomicamicrob
microbial-ecology,Materials and presentation for the 2022 ISB Microbiome course.
Organization: gibbons-lab
Home Page: https://isbscience.org/microbiome2022/
microbial-ecology,Materials and presentation for the 2023 ISB Microbiome course.
Organization: gibbons-lab
Home Page: https://isbscience.org/microbiome2023
microbial-ecology,A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
User: headonpillow
microbial-ecology,creating hybrid-gene phylogenetic trees for diversity analyses
User: jtfouquier
microbial-ecology,Environmental metagenomics, Spring 2022, Physalia Courses
User: karkman
microbial-ecology,Environmental metagenomics, Spring 2023, Physalia Courses
User: karkman
microbial-ecology,Tools for visualising microbial community amplicon data
User: kasperskytte
Home Page: https://kasperskytte.github.io/ampvis2/
microbial-ecology,QIIME 2 and R code along with manifests, metadata, inputs, and outputs for duckweed microbiome project (Acosta et al, 2020, Plos One).
User: kenscripts
microbial-ecology,PubMed trend analysis of ecological keywords
Organization: lab42open-team
microbial-ecology,📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models
User: lch14forever
microbial-ecology,Scripts for a manuscript titled "Subsurface Microbial Communities Reflect Regional-Scale Groundwater Hydraulic Connectivity" (submitted)
Organization: llnl
microbial-ecology,Full-length bacterial 16S rRNA marker genes from a diverse wastewater sample set. LaMartina, et al., ASM Resource Announcement, 2022
User: loulanomics
microbial-ecology,R scripts, metadata, input files & reference database
User: mmpust
microbial-ecology,Super snazzy online phylogenetic tree viewer with automatic customization using simple, tab-separated text files.
User: mooreryan
Home Page: https://www.iroki.net
microbial-ecology,Data and code for Kimbell et al., 2021
User: newtonlabuwm
microbial-ecology,Data and code for LaMartina et al., 2021
User: newtonlabuwm
microbial-ecology,Microbial co-occurrence network reveals climate and geographic patterns for soil diversity on the planet
User: npechl
microbial-ecology,Visualize deep ocean biogeochemical sediment samples in 2D and 3D
User: orphanlab
Home Page: https://arxiv.org/abs/2403.04761
microbial-ecology,Microbiome data simulator for power analysis
User: pchlenski
microbial-ecology,Groundwater bacterial communities evolve over time, exhibiting cyclic similarity patterns in response to multi-annual recharge events
User: pikatech
microbial-ecology,Supplemental code of the paper "Environmental selection shapes the formation of near-surface groundwater microbiomes".
User: pikatech
microbial-ecology,Pipepline for the standard quantification of microbial guilds from metagenomic samples.
User: pyubero
microbial-ecology,metaTag: functional and taxonomical annotation of metagenomes through phylogenetic tree placement
User: robaina
Home Page: https://robaina.github.io/MetaTag/
microbial-ecology,lake itag measurements over nineteen years
User: rrohwer
Home Page: https://www.robinrohwer.com/
microbial-ecology,Various functions for analysis of microbial community data
User: russel88
microbial-ecology,A simple package for simulations of microbial growth experiments with realistic sources of error.
User: ryansmcgee
microbial-ecology,Suppressing bacteria in microbial communities with reinforcement learning
User: singuyenmai
microbial-ecology,BM211 workshop materials
Organization: sipbs-compbiol
Home Page: https://sipbs-compbiol.github.io/BM211-Workshop-1/
microbial-ecology,Data from ecological studies about how the climate change drives the microbial community dinamycs in aquatic ecosystems
User: smjacques
microbial-ecology,Taller introductorio orientado a la visualización, análisis estadístico y ecológico en R, dirigido al manejo de datos en investigación, e impartido para la PUC durante 2021.
User: tamayoleivaj
microbial-ecology,From Waste to Feed | Insect Biotech Research Group
User: tklammsteiner
Home Page: https://www.fromwastetofeed.com/
microbial-ecology,Personal website
User: tklammsteiner
Home Page: https://tklammsteiner.github.io/
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