pchlenski Goto Github PK

americangut

American Gut Project data processing

aptr

Microbial dynamics inferred from single-sample amplicon sequencing

biol3308_lectures

Lectures for Barnard College BIOL3308 class

datamining

Microbial abundance data mining and metadata curation

dnc-regex

differentiable neural computer for regular expression matching

e4040-2021fall-project-biom-rr3415-pc2946-hs3164

Neural distance embeddings project

eprime

Translation of the predicative copula using vector methods

gda_project

Geometric data analysis (COMS 4995) final project

gpt_translate

Generate line-by-line translations using GPT API

grand_tour

Visualize high-dimensional data by low-dimensional animations

hyperdt

Hyperbolic decision trees

manifolds

Profiling manifolds in metagenomic data

mats

SERI MATS research sprint

mats-app

SERI MATS application research

microbial_genomics_labs

Labs for BIOL BC3300 Microbial Genomics (2023)

misdeed

Microbiome data simulator for power analysis

mixture

Mixture embeddings for microbiome data

mixture_embeddings

Mixture embeddings for microbiome data

mlp_linearization

neuroseed

Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)

p3_docs

This repository is for manage PATRIC static contents such as Website Tutorial, CLI Tutorial, User Guides, and PATRIC eNews.

pchlenski.github.io

chlenski.com - personal website

phyleak

Phylogenetic leakage: non-independence of sequence embeddings

phylosig

Phylogenetic signal (Pagel's lambda) and its relationship to metric curvature

rast-predictors

Predictors to facilitate automated RAST genome submission

resume

A LaTeX resume for Philippe Chlenski

tensor-puzzles

transformer

treemean

Find a consensus node given a tree and counts at leaves

turing

Turing machine simulator in Python