mgalardini Goto Github PK

2015_summer_school

Data for the 2015 Wellcome Trust summer school in Bioinformatics

2016_python_course

Material for the EBI predocs course on python

2017_python_course

Intermediate python programming course 🐍🏫

2018_ecoli_pathogenicity

Highlight genetic determinants of E. coli's pathogenicity

2018koyeast

Analysis of multiple yeast strains whole-genome knockout libraries 🔬📈

2019_ecoli_trascriptome

Analysis of E. coli transcriptomics data 📝📊

2021_python_course

2022_ecoli_commensal

Bacterial wg-GWAS for the detection of E. coli BSI and commensal genetic determinants

abstractfft

"Abstract" paintings using Fourier transform tricks 🎨🖥️

align_upstreams

Align and study transcription factor binding sites

bacteria2go

Quick and dirty script to download and analyse bacterial genomes from NCBI

bacteria2model

Quick and dirty scripts to build a bacterial genomic model

bioconda-recipes

Conda recipes for the bioconda channel.

biograpy

Biological Graphic tool in Python

biopython

My fork of the official Biopython repository, used for experimental branches etc

blitzquotes

Simple Android application that shows a random quote from the Blitz! crew

chembl_tools

Small scripts to make the most of the ChEMBL API

combat.py

python / numpy / pandas / patsy version of ComBat for removing batch effects.

contiguator

Bacterial genomes finishing tool for structural insights on draft genomes

demonicdevice

A cool add-on to your cthulhu role-playing game!

dpu

Data Processing Unit for eVOLVER

draftmeliloti

Draft contigs of two S. meliloti strains Vs. closed sequences

ductape

[not the original repo] Analyze and link genomics and phenomics experiments

ecopredict

Code for growth phenotypes prediction in E. coli and manuscript figures generation

eggnog-mapper

A program for bulk functional annotation of novel protein sequences using the EggNOG database.

evolver-electron

galauduino

Yet another implementation of Auduino (Arduino synth)

genomedca

glmnet_python

hyphy

HyPhy: Hypothesis testing using Phylogenies