Topic: snp Goto Github
Some thing interesting about snp
Some thing interesting about snp
snp,Polymorphic Edge Detection - An efficient polymorphism detector for NGS data
User: akiomiyao
snp,Tools for analyzing raw DNA test data files. Shows Y chromosome and mitochondrial mtDNA haplogroups. LGPLv3 - use freely but share improvements.
User: alinja
snp,Collecting Genotypes from ENA and make their SNPs
User: amirhoseinsafari
snp,Structured Network Programming with Sender / Receiver in Modern C++♦️
User: deepgrace
snp,SNP abundance correlates with network degree
User: dhimmel
Home Page: https://doi.org/bffr
snp,The DKFZ-ODCF, formerly DKFZ/eilslabs SNV-Calling Workflow
Organization: dkfz-odcf
snp,Phasing, haplotype reconstruction and crossover detection with single-nucleotide polymorphism data from multiparental populations.
User: goliczgenomelab
snp,GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.
User: grelot
snp,A set of scripts for calculating pairwise SNP distance
User: gtonkinhill
snp,Galaxy For Life Science - SNiPlay
Organization: ifb-elixirfr
snp,R package for RIVER (RNA-Informed Variant Effect on Regulation)
User: ipw012
snp,Count common and unique SNPs among several populations from a VCF format file.
User: jingfangsi
snp,This python script detects known traits in raw human genetic data.
User: michaelsebero
snp,(WIP) This python script helps you predict your Y-haplogroup offline.
User: michaelsebero
snp,A tool for simulating random mutations in any genome
User: mkpython3
snp,S&P 500 stock price prediction using Transformer model
User: mltrev23
snp,A QC pipeline for SVs calls based on coverage and SNP calls
Organization: ncbi-hackathons
snp,web-based protein structure viewer and analysis tool interactively or in batch mode
Organization: ncbi
Home Page: https://www.ncbi.nlm.nih.gov/Structure/icn3d
snp,An interactive graphical illustration of genetic associations and their biological context
Organization: oncogenetics
snp,Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
User: orangesi
snp,ld-tools: toolkit for linkage disequilibrium calculation designed to work locally
User: platonb
snp,gwasrapidd: an R package to query, download and wrangle GWAS Catalog data
User: ramiromagno
Home Page: https://rmagno.eu/gwasrapidd/
snp,Suit of R-scripts to perform landscape genomic analyses
User: rojaff
snp,Fast manhattenplots using ggplot2
User: roman-tremmel
snp,Mbovpan is a nextflow bioinformatic pipeline for Mycobacterium bovis pangenome analysis. The goal of Mbovpan is to help researchers to study the M. bovis pangenome in an automatic and easy way.
Organization: salvadorlab
snp,Warehousing DbSNP's JSON Data into PostgreSQL
User: seanharr11
Home Page: http://thelaziestprogrammer.com/warehousing-DbSNP-Part-I-download-and-create-db
snp,Touchstone file parsing and visualizing in Julia
User: sedictious
snp,Tool for genome wide association studies with Bayesian inference and statistical learning
User: snaketron
snp,SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.
Organization: solgenomics
snp,Pipeline for gene candidate discovery based on mutagenesis. Featured in gene cloning research published in Nature (DOIs: 10.1038/s41467-020-14937-2, 10.1038/s41467-021-23738-0, 10.1038/s41477-021-00971-5), Molecular Plant (DOI: 10.1016/j.molp.2021.05.010) and New Phytologist (DOI: 10.1111/nph.17075).
User: tc-hewitt
snp,vSNP -- validate SNPs
Organization: usda-vs
snp,Multi-bAse Codon-Associated variant Re-annotatiON (MACARON)
User: waqasuddinkhan
Home Page: http://www.genmed.fr/images/publications/data/MACARON_GenMed.zip
snp,Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for any species.
User: wshuai294
snp,A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines
Organization: yaolab-bioinfo
Home Page: https://venyao.xyz/MaizeSNPDB/
snp,R package – HLA Genotype Imputation with Attribute Bagging (development version only)
User: zhengxwen
Home Page: https://hibag.s3.amazonaws.com/index.html
snp,Data management of large-scale whole-genome sequence variant calls (Development version only)
User: zhengxwen
Home Page: http://www.bioconductor.org/packages/SeqArray
snp,R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)
User: zhengxwen
Home Page: http://www.bioconductor.org/packages/SNPRelate
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