Topic: mtdna Goto Github
Some thing interesting about mtdna
Some thing interesting about mtdna
mtdna,This page is contains all the software and commands I've used for my mtDNA analysis.
User: akmartian
mtdna,Tools for analyzing raw DNA test data files. Shows Y chromosome and mitochondrial mtDNA haplogroups. LGPLv3 - use freely but share improvements.
User: alinja
mtdna,Mapping of RNAseq data on reference genome using Hisat2 for reduced mismatch penalties
User: arntet
mtdna,Raw code to get polymorphisms from samples analysed by using the PowerSeq® CRM Nested System kit (Promega Corporation)
User: danielrca
mtdna,A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods
User: danielrca
mtdna,COI sequences files used to test the COI Classifier Web Portal
Organization: hajibabaei-lab
mtdna,Two-parameter Kimura distributions for mtDNA heteroplasmy analysis
User: lbozhilova
mtdna,The mitochondrial workbench
Organization: mitobench
mtdna,
Organization: mitoclub
Home Page: https://mitoclub.github.io/GlobalStructure/
mtdna,A bioinformatics pipeline to analyze mtDNA from NGS data
Organization: mitongs
Home Page: http://sourceforge.net/projects/mtoolbox/?source=navbar
mtdna,Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.
User: mnievesc
mtdna,This repository contains practical data analyses exercises for the special course on Paleogenomics and Anthropology held at the National School of Anthropology of Mexico (ENAH), May 6 to 10, 2019. Topics include performing QC on aDNA NGS data, assigning mtDNA haplogroups and testing hypotheses w/PCA and ADMIXTURE analyses. No previous command-line experience needed.
User: mnievesc
mtdna,SRTI framework to perform variant calling and prioritization of WES
User: mrueda
mtdna,SRTI - web server to analyze mtDNA
User: mrueda
mtdna,Contamination detection workflow based on mtDNA
Organization: mtdna
mtdna,HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
User: seppinho
Home Page: https://haplogrep.i-med.ac.at/
mtdna,mtDNA Variant Caller
User: seppinho
Home Page: https://mutserve.vercel.app
mtdna,This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequences.
User: terrimporter
mtdna,This repository contains the scripts used to process Illumina MiSeq 18S, ITS2, and CO1 metabarcodes for Jesse Hoage's Master's thesis (2018). The ammended CO1 reference set is also included here (CO1 Classifier v2.1).
User: terrimporter
mtdna,Reconstruction and analysis of viral and host genomes at multi-organ level
Organization: viromelab
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