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bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

cayman

Cayman is a Jekyll theme for GitHub Pages

cloudgene-apps-docker

Available Docker Apps for the Hadoop Workflow System Cloudgene

cloudgene-boilerplates

a collection of cloudgene boilerplates

cloudgene-docker

Hadoop Workflow System on Docker (http://cloudgene.uibk.ac.at)

cloudgene-yarn-docker

Cloudgene +YARN + Docker

connectors-workspace-one

Sample Connectors for VMware Workspace ONE Mobile Flows

docker-cloudera-quickstart

Docker Cloudera Quick Start Image

ember-file-upload

HTML5 file uploads for Ember apps

ember-highcharts

A Highcharts, HighStock and HighMaps component for ember cli

ember-light-table

Lightweight, contextual component based table for Ember 2.3+

ember-paper-start

A skeleton application for a typical web application written using EmberJS framework with Ember Paper

ember-paper-stepper

Step up your app with material steppers.

hadoop-101

Hadoop and Cloudgene for Beginners

hadoop-bam

Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework

haplogrep-cmd

HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.

iecat

Integrating external controls into association test

imputation-panels

Create reference panels for Michigan Imputation Server

jbwa

Java Bindings (JNI) for bwa

just-the-docs

A modern, high customizable, responsive Jekyll theme for documention with built-in search.

lukfor.github.io

forer.it website using jekyll

lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery

magic-reports

A java library to generate beautiful html reports

mutserve

mtDNA Variant Caller

nf-gwas

A nextflow pipeline to perform genome-wide association studies using regenie.

nf-test-plugin-example

A nf-test example

nft-vcf

nf-test plugin to provide support for VCF files.

poretools

a toolkit for working with Oxford nanopore data

r21x_analysis

regenie

regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.