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This repository contains the scripts used to process Illumina MiSeq 18S, ITS2, and CO1 metabarcodes for Jesse Hoage's Master's thesis (2018). The ammended CO1 reference set is also included here (CO1 Classifier v2.1).

License: Other

Perl 62.26% Shell 37.74%
metabarcoding 18s rdna coi mtdna its2 rdpclassifier

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