Topic: genotype Goto Github
Some thing interesting about genotype
Some thing interesting about genotype
genotype,Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
Organization: 0xtcg
Home Page: http://aldy.csail.mit.edu
genotype,Collecting Genotypes from ENA and make their SNPs
User: amirhoseinsafari
genotype,Framework for Interpretable Neural Networks
User: arnovanhilten
genotype,mgatk: mitochondrial genome analysis toolkit
User: caleblareau
Home Page: http://caleblareau.github.io/mgatk
genotype,Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C
Organization: cfe-lab
Home Page: https://cfe-lab.github.io/MiCall
genotype,Compute haplotype and genotype probabilities, and perform imputation, in arbitrary pedigrees, including cases under possible observational errors.
User: cnettel
genotype,Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in pure Python.
Organization: computational-genomics-bsc
genotype,Support Vector Structural Variation Genotyper
User: dantaki
genotype,Population-scale genotyping using pangenome graphs
Organization: decodegenetics
Home Page: http://dx.doi.org/10.1038/ng.3964
genotype,Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST.
User: dr-roshyara
genotype,GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for computational biology and genetics research.
User: dvitale199
genotype,Analysis, annotation and prediction of SNPs related to prostate and breast cancer cell lines.
User: erma0x
genotype,A pipeline for detecting Somatic Insertion of DE novo RETROcopies
Organization: galantelab
Home Page: https://sideretro.readthedocs.io
genotype,haplotype estimation, custom panel creation, and genotype imputation
Organization: genemap-research
Home Page: https://genemap-research.github.io/genemapimputationservice/
genotype,A simple python library to identify the most likely strain from the population
Organization: gregor-mendel-institute
Home Page: https://arageno.gmi.oeaw.ac.at/
genotype,Demonstration of an Artificial Evolution process on a fleet of Boid ships collecting gold using Unreal Engine 4.
User: harrisonv789
genotype,CGPS implementation of Genotyphi for assembled genomes.
Organization: imperialcollegelondon
genotype,Pipeline with lots of user input for processing SNP data towards ADMIXTURE and/or imputation
User: juliedwhite
genotype,Analysis of genotype data from 23andMe DNA testing.
User: jyu-theartofml
genotype,Manual
User: lauzingaretti
Home Page: https://lauzingaretti.github.io/pSBVB/
genotype,Matching genotype and RNA-seq data to conform IDs of brain samples
Organization: lieberinstitute
Home Page: http://research.libd.org/brainstorm/
genotype,PLINK reader for Python.
Organization: limix
genotype,Evolutionary genomics of chromosomal inversions in Atlantic herring
User: mafaldasferreira
genotype,A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
User: mehrdadbakhtiari
Home Page: http://advntr.readthedocs.io/
genotype,This python script detects known traits in raw human genetic data.
User: michaelsebero
genotype,summarize and visualize the genotypes categories per sample in a VCF file
User: mr-eyes
genotype,Single Cell Allele-Specific Analysis - Containerized tool for genotyping, phasing, mapping bias correction, and generation of single cell allele-specific counts
User: p4rkerw
genotype,Program for positive genetic identification and IBD detection from low-coverage sequencing data
Organization: paleogenomics
genotype,A Python package for pharmacogenomics (PGx) research
User: sbslee
Home Page: https://pypgx.readthedocs.io
genotype,Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy metrics like: IQS(Imputation Quality score), r2 (Pearson correlation), Concordance.
Organization: selfdecode
Home Page: https://www.selfdecode.com
genotype,Modeling and Analysis of (Statistical) Genetics data in python
User: shz9
Home Page: https://shz9.github.io/magenpy/
genotype,Tokyo Symposium on Genomic Medicine (2024)
User: shz9
Home Page: https://www.tokyo-symposium.com/
genotype,SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.
Organization: solgenomics
genotype,Stefan's imputation accuracy package
User: stefanedwards
genotype,
User: teepean
genotype,A Drush-based loader for VCF files that follows the genotype storage rules outlined by ND genotypes.
Organization: uofs-pulse-binfo
genotype,Drupal/Tripal: Tripal interface for Chado Natural Diversity Genotypic data.
Organization: uofs-pulse-binfo
Home Page: https://nd-genotypes.readthedocs.io/en/latest/index.html
genotype,Predict height by gender and genotypes using machine learning.
User: wwtg99
genotype,Efficient compression and retrieve of genotype data with integer sparse matrices
Organization: yaolab-bioinfo
Home Page: https://venyao.xyz/ECOGEMS/
genotype,GBC (short for GenoType Blocking Compressor) is a blocking compressor for genotype data, which aims at creating a unified and flexible structure-GenoType Block (GTB) for genotype data in the variant call format (VCF) files.
User: zhangliubin
Home Page: http://pmglab.top/gbc/
genotype,Rare variant test software for next generation sequencing data
User: zhanxw
genotype,all methods related to Enterobase
User: zheminzhou
Home Page: https://enterobase.warwick.ac.uk
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