Name: Pulse Bioinformatics, University of Saskatchewan
Type: Organization
Bio: Our group has a strong focus on creating flexible, re-usable open-source software during the course of our work.
Location: Saskatoon, Saskatchewan
analyzedphenotypes
Tripal/Drupal support for analyzed phenotypic data including data loaders, exporters, trait pages and summaries on germplasm pages.
brapi-graphical-filtering
Tool for filtering BrAPI ObservationUnits and Germplasm by Observation values
chado_custom_search
Provides custom search functionality for those who don't wish to use Drupal Views.
cross_management
Drupal:Tripal: Management of breeding program crosses integrating with Tripal Stock/Germplasm.
cvitembed
Tripal module to embed CViTjs diagrams into a Tripal site.
drupal7-tripal3
Drupal 7.x Tripal 3.x Development Environment for Cloud9. Includes a script to create a fresh Tripal 3.x site quickly.
generate_trpdata
Generate various types of data for testing Tripal functionality
genotypes_loader
A Drush-based loader for VCF files that follows the genotype storage rules outlined by ND genotypes.
germ_summary
Provides a matrix describing the number of germplasm (chado.stocks) per organism combination.
germcollection
Provides Fields and views to support germplasm collections in Tripal
haplotype-map
A library for visualizing haplotype data in the form a colored matrix.
haplotype-map-embed
Provide a page for each haplotype-map in Tripal site.
helium_exporter
Provides a data export of germplasm and phenotypic data for visualization using Helium.
howto-use-r-for-dataanalysis
How do I tidy, download, and graph my data?
knowpulse-knowledgebase
Provides tutorials and documentation for using https://knowpulse.usask.ca
knowpulse-knowledgebase.github.io
Provides the core site for the KnowPulse KnowledgeBase.
kp_entities
Creates and configures all Tripal Content Types used by KnowPulse.
kp_fields
A collection of fields used by KnowPulse.
kp_frontpage
Customize the frontpage of KnowPulse.
kp_nodes
Drupal/Tripal: KnowPulse Node-specific themeing.
kp_searches
Provides custom search functionality for KnowPulse.
kp_views
Drupal/Tripal: KnowPulse-specific Views
kptheme
The Theme for KnowPulse
lims_rawseq
Drupal/Tripal: Provides a simple node type for recording Sequencing Run details.
nd_genotypes
Drupal/Tripal: Tripal interface for Chado Natural Diversity Genotypic data.
our-modules
University of Saskatchewan, Pulse Bioinformatics Tripal modules.
posconvert
Converts positions in a tab-delimited file (e.g. VCF) from Lc0.8 to Lc1.2
rawphenotypes
A Tripal module for storing raw phenotypic data. Specifically meant to help researchers contribute raw data, visualize summaries and download for further analysis.
scripts
Scripts and one-liners used by our group. Saved here so they are not forgotten...
synvisio
SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity detection toolkit.
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
