uofs-pulse-binfo / germ_summary Goto Github PK

The maternal parent header row is not highlighted in the same way as the paternal parent column when mouse pointer is on siblings cell.

This is cause by theme_table setting that creates a sticky header where table head markups get duplicated (id, class etc. attributes) causing multiple elements of the same id in the DOM and scripts could not ascertain element/cell to highlight.

Germ RIL summary field needs to be updated to match the summary matrix method of fetching maternal and paternal parents.

PDOException: Cardinality violation ERROR: more than one row returned by a subquery used as an expression.

We would like to create a Tripal 3 Field that displays the germplasm summary on an organism page.

Specification:

• Should extend ChadoField, ChadoFieldWidget and ChadoFieldFormatter
• Use the ChadoField example from the tripal_example module. This will magically retrieve the organism_id based on the entity. You can then use that to determine which genus chart to display
• Warning: the cvterm you choose must already exist or your field won't show in the drop-down,etc
• The ChadoFieldFormatter is where you add the code to display the chart.
• clicking on the cell is expected to jump out to the requested page just as it does now (no need to embed the stock listing)

Resources:

• Developers Guide: http://tripal.info/tutorials/v3.x/developers_handbook/custom-field
• Tutorial for Custom Tripal Fields here: https://github.com/tripal/tripal_example/blob/7.x-3.x/trpexp_fields/tutorial/trpexp_fields_custom_field.md
• Tripal Example here: https://github.com/tripal/tripal_example/tree/7.x-3.x/trpexp_fields
• More Examples: https://github.com/tripal/trpfancy_fields/

To be made Tripal v3 compatible this module simply needs the dependency in the .info file changed from tripal_core to tripal.

This is due to the main change between Tripal v2 and Tripal v3 being Nodes => Entities and this module does not interact with Tripal Nodes.

I'm considering adding the summary matrix to the organism page to allow for fast lookup of RILs by species. However, it currently won't fit well.

We can streamline it by

1. Angling the top header.
2. Restricting column/row labels to the species (e.g. "lamoteii" instead of "L. lamoteii")
3. Limiting row/column height/width to the height of the text with minimal margin.

Currently the F-stage is not being indicated in the Summary (http://knowpulse.usask.ca/portal/germplasm/list/Lens/4/4)

Despite confirmation that the properties have been entered:

Recent update to stock relationship caused incorrect placement/parent of count.