Topic: plink Goto Github
Some thing interesting about plink
Some thing interesting about plink
plink,A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert between formats, merge datasets or subset by individuals in each of the formats.
Organization: acad-uofa
plink,A python script to remove duplicate snps from plink files and recode the resultant files into plink binaries free of duplicate snps
User: adiamb
plink,Work with PLINK from R
Organization: ajresearchgroup
plink,Manage CSF (ex. csf -a [ip_addr]) from VB.Net Form Application with plink
User: alvifsandana
plink,Automated Tool for Global Screening Array analysis
User: anilprakash94
plink,Introduction to Human Population Genetics
User: bajicv
Home Page: https://popgen-intro-bajicv.readthedocs.io/en/latest/
plink,The DSL for Dotfiles
User: benknoble
plink,population structural variant calling with smoove
User: carolinapb
plink,Toolkit for the efficient construction and analysis of polygenic risk scores in R.
User: chris1221
Home Page: https://chris1221.gitbooks.io/polygenic-risk-scores-in-r/content/
plink,Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in pure Python.
Organization: computational-genomics-bsc
plink,esohinformatics
User: esohkevin
Home Page: https://esohkevin.github.io
plink,tips and tricks in genome-wide association studies - a tutorial
User: esohkevin
plink,gwas workflow from raw intensity data to in-silico functional mapping
Organization: genemap-research
Home Page: https://genemap-research.github.io/docs/workflows/gwas/
plink,Map SNP positions to a supplied reference assembly using BLAST. Filter results for best hit. Output in plink format.
User: georgiesamaha
plink,In silico research group's bioinformatics toolbox for network and machine learning analysis
User: hexhead
plink,BIOI500 - Advanced Bioinformatics final project at Loyola University Chicago.
User: hwittich
plink,In Silico Bioinformatics Toolbox
Organization: insilico
Home Page: http://insilico.utulsa.edu/index.php/inbix/
plink,Command Line Python Utility to convert from plink format to Abecasis Lab's QTDT format (used by Merlin).
User: jlc-christie
plink,Step-by-step approach in the analysis of Rainbow trout DNA from raw reads to population insights using fastqc, trimmomatic, bwa, vcftools, plink, and R.
User: kalilamali
plink,Very basic Snakemake workflow
User: karatugo
plink,Setup and starter script for the PLINK R plugin.
User: kenhanscombe
plink,Fixes and new release. PuTTY Tunnel Manager allows you to easily open tunnels, that are defined in a PuTTY session, from the system tray. You can also move the tunnels from PuTTY to PuTTY Tunnel Manager. This allows you to use PuTTY just for SSH shell sessions (without opening tunnels), and use PuTTY Tunnel Manager just for tunneling.
User: kostapc
plink,LocusZoom in Jupyter notebooks
User: krassowski
plink,PLINK reader for Python.
Organization: limix
plink,A comprehensive tutorial about GWAS and PRS
User: mareesat
plink,Get information about direction of agreement for any two lists of SNPs, based on LDlink and plink
User: mikedacre
plink,Perform liftover on plink files
User: milescsmith
plink,The CGR GWAS QC processing workflow.
Organization: nci-cgr
Home Page: https://nci-cgr.github.io/GwasQcPipeline/
plink,Compressed storage for SNP data
Organization: openmendel
Home Page: https://openmendel.github.io/SnpArrays.jl/latest
plink,Analysis of SNPs that have the greatest impact of appearance of mammary gland tumour in dogs.
User: orangepomeranian
plink,This project leverages PLINK for GWAS Quality Control, focusing on SNP analysis and PCA for ancestry insights, showcasing the vital role of bioinformatics in enhancing population genetics research.
User: orangepomeranian
plink,Python library to work with PLINK files.
User: roshchupkin
plink,An integrated pipeline for analysis and visualization of Population Structure and Relatedness based on genome-wide genetic variant data
User: solelena
plink,Bash scripts provided here to run various GWAS QC, Imputation, PCA, and association testing steps using PLINK, SMARTPCA, RStats and Visualization
User: svpipaliya
plink,EXAMPLE CODE IMPUTATION WITH ONE PHASED REFERENCE PANEL FROM PLINK FILES
User: tojojames
plink,Windows frontend for digging SSH tunnels and creating socks proxies
User: uroesch
plink,PlinkProxy for PortableApps.com
User: uroesch
plink,Script package to automate waking and playing your PS3 from your (remote) Windows PC
User: vegz78
plink,Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
User: zhanxw
Home Page: http://zhanxw.github.io/seqminer/
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