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Name: Shweta Pipaliya
Type: User
Company: EPFL
Twitter: pipa_sw
Location: Lausanne, Switzerland
Name: Shweta Pipaliya
Type: User
Company: EPFL
Twitter: pipa_sw
Location: Lausanne, Switzerland
Script toolkit for identifying and classifying homologous gene/protein sequences
Basic Scripts for Day to Day Bioinformatics
Bonsai: Fast, flexible taxonomic analysis and classification
A fast and sensitive gapped read aligner
This repo contains scripts and workflows for performing bulk transcriptomics analyses
This folder contains Q&A sessions and recommendations from ChatGPT for various bioinformatics, genomics, machine-learning, coding-related tasks, and general biology inquiries. Kept as general-purpose notebook.
Scripts for genome assembly associated tasks - scripts and parameters set up for run on Compute Canada HPC
Python for Data Science and Machine Learning: day 1
A comprehensive tutorial about GWAS and PRS
This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.
Bash scripts provided here to run various GWAS QC, Imputation, PCA, and association testing steps using PLINK, SMARTPCA, RStats and Visualization
Command-line tools, commands, and code snippets for performing routine data processing and bioinformatics tasks
A fast multi-threaded k-mer counter
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
The second version of the Kraken taxonomic sequence classification system
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
Interactively explore metagenomes and more from a web browser.
An accurate GFF3/GTF lift over pipeline
Machine learning and deep learning resources
Scripts to download genomes from the NCBI FTP servers
course material from EPFL L&D's Python for Data Sciences and Machine Learning Course (Sep 21-23)
Genome assembly evaluation tool
Tools (written in C using htslib) for manipulating next-generation sequencing data
Single-cell analysis in Python. Scales to >1M cells.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.