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avsx_admixture

Repository that stores scripts that are check correlation between autosomal Q files and X-chr Q files and outputs sorted table with best pair of files at the top. It works with ADMIXTURE and fastSTRUCTURE output files.

cgmlst_scripts

Collection of scripts for cgMLST analyses

cgmlstorg_scheme_scraper

cgMLST.org webpage scraper. Download and list available schemes from cgMLST.org, and find their versions and last modification date and time.

enterobase_scheme_scraper

Enterobase scheme scraper. Download and list available schemes from Enterobase, and find their last modification date and time.

gwas_intro

Intoduction to GWAS

ind_pres_peer_reviews

R script to create personalized html (or pdf) files with a summary from Google Forms. Google Forms was used to gather presentations peer-review for each presenter in multiple groups of students.

mtdna_nomenclutter

This repository includes scripts and data necessary to reproduce analyses and figures from the study "mtDNA “Nomenclutter” and its Consequences on the Interpretation of Genetic Data".

phylosensitive_hap

plot_ggtree_from_nexus

popgen_intro

Introduction to Human Population Genetics

pubmlst_scheme_scraper

PubMLST.org webpage scraper. Download and list available schemes and profiles from PubMLST.org, and find their last modification date using command line.

pymlst

whole genome MLST analysis

random_sippets

This repository stores random snippets that might be useful again in the future.

unix_intro

Introduction to Unix