Topic: long-reads Goto Github
Some thing interesting about long-reads
Some thing interesting about long-reads
long-reads,Close assembly gaps using long-reads at high accuracy.
User: a-ludi
Home Page: https://a-ludi.github.io/dentist/
long-reads,An accurate aligner of long reads to a variation graph, based on co-linear chaining
Organization: algbio
long-reads,Predict plasmids from uncorrected long read data
User: andrewjpage
long-reads,Reference-free Binning of Metagenomics Long Reads using Coverage and Composition
User: anuradhawick
Home Page: https://doi.org/10.1093/bioinformatics/btaa441
long-reads,Long-read aligner to pangenome graphs
Organization: at-cg
long-reads,⛓ Long Interval Nucleotide K-mer Scaffolder
Organization: bcgsc
long-reads,Minimizer-based assembly scaffolding and mapping using long reads
Organization: bcgsc
long-reads,Tandem repeat expansion detection or genotyping from long-read alignments
Organization: bcgsc
long-reads,Fake genomes, fake sequencing, real insights.
Organization: bioinfologics
Home Page: https://bioinfologics.github.io/Pseudoseq.jl/dev
long-reads,Long read production pipelines
Organization: broadinstitute
Home Page: https://broadinstitute.github.io/long-read-pipelines/
long-reads,GenStore is the first in-storage processing system designed for genome sequence analysis that greatly reduces both data movement and computational overheads of genome sequence analysis by exploiting low-cost and accurate in-storage filters. Described in the ASPLOS 2022 paper by Mansouri Ghiasi et al. at https://people.inf.ethz.ch/omutlu/pub/GenStore_asplos22-arxiv.pdf
Organization: cmu-safari
long-reads,SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs/1910.09020.
Organization: cmu-safari
long-reads,Method to optimally select samples for validation and resequencing
User: fritzsedlazeck
long-reads,Long-reads Gap-free Chromosome-scale Assembler
Organization: ganlab
long-reads,Reference-guided transcript discovery and quantification for long read RNA-Seq data
Organization: goekelab
long-reads,Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
Organization: goekelab
long-reads,Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Organization: hku-bal
long-reads,Clair3-Trio: variant calling in trio using Nanopore long-reads
Organization: hku-bal
long-reads,ClairS - a deep-learning method for long-read somatic small variant calling
Organization: hku-bal
long-reads,ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Organization: hku-bal
long-reads,Graph-based assembly phasing
User: katerinakazantseva
long-reads,PEPPER-Margin-DeepVariant
User: kishwarshafin
long-reads,Derives consensus sequences from a set of long noisy reads by clustering and error correction.
User: ksahlin
long-reads,A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
User: lankycyril
Home Page: https://www.biorxiv.org/content/10.1101/2020.01.31.929307v1
long-reads,Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
User: lpryszcz
long-reads,
User: mehelmy
long-reads,Scalable long read self-correction and assembly polishing with multiple sequence alignment
User: morispi
Home Page: https://doi.org/10.1038/s41598-020-80757-5
long-reads,Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
Organization: mortazavilab
Home Page: https://www.biorxiv.org/content/10.1101/2022.11.08.515683v1
long-reads,memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
User: muellan
long-reads,Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
Organization: nanoporetech
long-reads,A long read simulator based on badread idea
User: natir
long-reads,Yet Another Chimeric Read Detector
User: natir
long-reads,Fast and accurate de novo assembler for long reads
Organization: nextomics
long-reads,Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Organization: nf-core
Home Page: https://nf-co.re/taxprofiler
long-reads,Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
User: orangesi
long-reads,Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
User: ptrebert
long-reads,Order and orientation of complete bacterial genomes
Organization: quadram-institute-bioscience
Home Page: https://doi.org/10.1099/mgen.0.000396
long-reads,A versatile compressor of third generation sequencing reads.
Organization: refresh-bio
long-reads, An algorithm for centromere assembly using long error-prone reads
User: seryrzu
long-reads,Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
User: smehringer
long-reads,nPoRe: n-Polymer Realigner for improved pileup-based variant calling
User: timd1
long-reads,A long-read analysis toolbox for cancer and population genomics
User: tobiasrausch
long-reads,Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
Organization: treangenlab
long-reads,A fast tool for hybrid genome assembly of long and short reads
Organization: vpc-ccg
long-reads,abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
Organization: xinglab
Home Page: https://github.com/yangao07/abPOA
long-reads,TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
Organization: xinglab
Home Page: https://github.com/yangao07/TideHunter
long-reads,abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
User: yangao07
long-reads,TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
User: yangao07
long-reads,A scalable variant calling and benchmarking framework supporting both short and long reads.
User: yjx1217
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.