Topic: copy-number-variation Goto Github
Some thing interesting about copy-number-variation
Some thing interesting about copy-number-variation
copy-number-variation,Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution
User: a-mahdipour
copy-number-variation,Polymorphic Edge Detection - An efficient polymorphism detector for NGS data
User: akiomiyao
copy-number-variation,DETOPT is a combinatorial optimization method for DETermining Optimal Placement in Tumor progression history of SNVs from the genomic regions impacted by CNAs using multi-sample bulk DNA sequencing data
User: algo-cancer
copy-number-variation,R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.
User: antoniodefalco
Home Page: https://www.nature.com/articles/s41467-023-36790-9
copy-number-variation,R package to create plots representing copy number data using karyoploteR
User: bernatgel
copy-number-variation,:tada: CNVetti â robust, efficient, and versatile clinical CNV calling from HTS data
Organization: bihealth
copy-number-variation,Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity
Organization: bio-ontology-research-group
copy-number-variation,
Organization: broadinstitute
copy-number-variation,CNAqc - Copy Number Alteration (CNA) Quality Check package
Organization: caravagnalab
copy-number-variation,Inference of copy number and mutation multiplicity in oncology
Organization: caravagnalab
copy-number-variation,Map single-cell transcriptomes to copy number evolutionary trees.
Organization: cbg-ethz
Home Page: https://www.biorxiv.org/content/10.1101/2021.11.04.467244v1
copy-number-variation,Single-cell copy number calling and event history reconstruction.
Organization: cbg-ethz
Home Page: https://www.biorxiv.org/content/10.1101/2020.04.28.065755v1
copy-number-variation,Allele-specific copy number estimation with whole genome sequencing
Organization: dkfz-odcf
Home Page: http://aceseq.readthedocs.io
copy-number-variation,Copy number estimation of highly duplicated sequences
User: dpastling
copy-number-variation,Copy Number Variation
User: flowhub-team
copy-number-variation,Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
User: gavinha
copy-number-variation,ClassifyCNV: a tool for clinical annotation of copy-number variants
Organization: genotek
copy-number-variation,MSDS Thesis - Pan-Collagen Survival Analysis of CNV in Ovarian Cancer
User: hodgesr2
copy-number-variation,Pipeline for copy number variant calling from Whole Exome sequencing data using CODEX
Organization: iarcbioinfo
copy-number-variation,What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
Organization: illumina
copy-number-variation,Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
Organization: imgag
copy-number-variation,TAD-aware annotation of CNVs
User: jakob-he
copy-number-variation,CNprep Package - Pre-process DNA Copy Number (CN) Data for Detection of CN Events
Organization: krasnitzlab
copy-number-variation,R Package to compare copy number variant (CNV) results from multiple samples/methods
Organization: krasnitzlab
Home Page: https://krasnitzlab.github.io/CNVMetrics/
copy-number-variation,IhybCNV: An intra-hybrid approach for CNV detection from next-generation sequencing data
User: mk-runner
copy-number-variation,Contains the code and scripts used to process and analyze the data for my analysis of super-enhancer function in ovarian cancer cells (OVCAR3) and in patient RNA-seq and Copy Number data from The Cancer Genome Atlas (TCGA). This project was published by Nat. Communications in July 2022. https://doi.org/10.1038/s41467-022-31919-8
User: mkelly9513
copy-number-variation,Galaxy Tool Shed repositories maintained and developed by the Morin Lab.
Organization: morinlab
copy-number-variation,Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations
Organization: mskcc
copy-number-variation,Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec
User: nriddiford
copy-number-variation,CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology
User: ohdongha
Home Page: https://doi.org/10.1093/dnares/dsy035
copy-number-variation,Workflow for Sequenza, cellularity and ploidy
Organization: oicr-gsi
copy-number-variation,Clinical Whole Genome and Exome Sequencing Pipeline
Organization: openomics
Home Page: https://openomics.github.io/genome-seek/
copy-number-variation,Roche entry into Precision FDA hackathon
Organization: phcanalytics
copy-number-variation,An R package for detecting copy number variants from SNPs data
User: piyalkarum
Home Page: https://piyalkarum.github.io/rCNV/
copy-number-variation,VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number variants (CNVs) from targeted next-generation sequencing data. For algorithmic details, see Pugh TJ et al. Genet Med. 2016 Jul;18(7):712-9.
Organization: pughlab
copy-number-variation,Tool for calling tumour-specific somatic copy number alterations from targeted sequencing data. This tool is based on the germline copy number variant caller published by Pugh TJ et al. Genet Med. 2016 Jul;18(7):712-9.
Organization: pughlab
copy-number-variation,A Snapshot Neural Ensemble Method for Cancer Type Prediction Based on Copy Number Variations
User: rezacsedu
copy-number-variation,Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations
User: rptashkin
copy-number-variation,eXome Hidden Markov model (XHMM) - Copy Number Variants (CNVs) from Whole Exome Sequencing Data
User: rrafiee
copy-number-variation,Probabilistic inference of somatic copy number alterations using repeat DNA (FAST-SeqS)
User: samabs
copy-number-variation,Epicopy R package for CNV identification from methylation microarrays.
User: sean-cho
copy-number-variation,NCutYX is an R package for clustering different types of genomic data.
User: seborinos
copy-number-variation,:package: Automate Absolute Copy Number Calling using 'ABSOLUTE' package
User: shixiangwang
copy-number-variation,Personal Cancer Genome Reporter (PCGR)
User: sigven
Home Page: https://sigven.github.io/pcgr
copy-number-variation,My Solution for PrecisionFDA Brain Cancer Predictive Modeling and Biomarker Discovery Challenge
User: skoc
Home Page: https://precision.fda.gov/challenges/8
copy-number-variation,nPoRe: n-Polymer Realigner for improved pileup-based variant calling
User: timd1
copy-number-variation,ConanVarvar: a versatile tool for the detection of large syndromic copy number variation from whole genome sequencing data
Organization: vccri
copy-number-variation,POSTRE: Prediction Of STRuctural variant Effects
User: vicsanga
copy-number-variation,Some workflows I wrote for my phd projects
User: xukeren
Home Page: https://xukeren.github.io/phd-pipeline/
copy-number-variation,Deep multiple instance learning model for predicting deletion pathogenicity and gene haploinsufficiency.
User: zhihan-leo-liu
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