Name: Sigve Nakken
Type: User
Company: Institute for Cancer Research, Oslo University Hospital / Department of Informatics, University of Oslo
Bio: research scientist - precision cancer medicine // genomics // cancer data science
Twitter: sigven
Location: Oslo, Norway
Blog: https://sigven.github.io
2020plusdocker
Docker set up for https://github.com/KarchinLab/2020plus
bioconda-recipes
Conda recipes for the bioconda channel.
cacao
Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
cancerhotspots
R data package with mutational hotspots in cancer
cpsr
Cancer Predisposition Sequencing Reporter (CPSR)
dnamelt
Software to calculate melting profile for a DNA sequence
epacts-docker
Dockerized version of EPACTS
gdcomics
Retrieval of cancer OMICS data from GDC
geneoncox
Human gene annotations for the oncology domain
gganatogram
Create anatograms using ggplot2
gtexrna
Gene expression retrieval with GTEx API
gvanno
Generic human DNA variant annotation pipeline
gwasoncox
Cancer variant data from genome-wide association studies (GWAS)
literaturevault
Biomedical literature reference data for precision cancer medicine
oncoenrichr
Cancer-dedicated gene set interpretation
opentargets_pp
Pre-processing of target, drug and indication data from raw JSON data downloaded from Open Targets Platform
pcgr
Personal Cancer Genome Reporter (PCGR)
pharmoncox
Targeted and non-targeted anticancer drugs and drug regimens
phenoncox
Crossmapped phenotype ontologies for the oncology domain
plsd
Prospective Lynch Syndrome Database (PLSD) - cumulative risk for cancer by age, genetic variant, and gender
portfolio
🚀 Create a dynamic portfolio by just providing your GitHub username.
sigven.github.io
Minimal personal website
skywalkr
code for Gogleva et al manuscript
sv_anno
Processing and annotation of somatic structural variants
vcf2tsvpy
Genomic VCF to tab-separated values
vcfhelpr
Functions to order, write and crossmap VCF/BED records in R
vcfmerge
MuTect2 + Strelka somatic VCF merger
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
