Topic: synteny Goto Github
Some thing interesting about synteny
Some thing interesting about synteny
synteny,An R package to infer and analyze synteny networks from protein sequences
User: almeidasilvaf
Home Page: https://almeidasilvaf.github.io/syntenet/
synteny,Trace intervals between genomes using a synteny map
User: arendsee
synteny,Synteny Mapping and Analysis Program
User: csoderlund
synteny,A Java Desktop application with a graphical user interface for the discovery of colinear syntenic blocks across thousands microbial genomes
User: dinasv
synteny,R package to visualize Synteny across biological species
Organization: dpp4researchgroup
Home Page: https://dpp4researchgroup.github.io/SyntenyViz/
synteny,Finding regions of similarity between plasmids
User: erinyoung
synteny,Pipeline to prepare alignments for visualization with ACT (goo.gl/1T28jX) and for locating possible inter-chromosomal re-arrengments/misjoints
User: fg6
synteny,AKRUP: ancestral karyotype reconstruction universal pipeline
User: genome-structure-evolution-analysis
synteny,Bioinformatics pipeline for binding sites prediction
User: ihsanmuchsin
synteny,Parse the syntney
User: jnarayan81
synteny,AccuSyn: An Accurate Web-based Genome Synteny Browser
User: jorgenunezsiri
Home Page: https://accusyn.usask.ca/
synteny,A visualization tool for viewing MCscanX Synteny Collinearity files (outdated please check description or readme)
User: kiranbandi
Home Page: https://kiranbandi.github.io/mcscanx-synteny-visualizer/
synteny,R package for the reproducible detection of synteny blocks using genetic map data
User: ksamuk
Home Page: https://ksamuk.github.io/syntR/index.html
synteny,[CRBHits](https://github.com/kullrich/CRBHits) is a reimplementation of the Conditional Reciprocal Best Hit algorithm [crb-blast](https://github.com/cboursnell/crb-blast) in R.
User: kullrich
synteny,Federating genomes with love (and synteny derived from functional annotations)
Organization: legumeinfo
Home Page: https://gcv.legumeinfo.org/
synteny,Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
User: lpryszcz
synteny,CoGe (Comparative Genomics) Platform
Organization: lyonslab
Home Page: http://genomevolution.org
synteny,A genome visualization python package for comparative genomics
User: moshi4
Home Page: https://moshi4.github.io/pyGenomeViz
synteny,Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
Organization: nf-core
Home Page: https://nf-co.re/pairgenomealign
synteny,CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology
User: ohdongha
Home Page: https://doi.org/10.1093/dnares/dsy035
synteny,Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
User: orangesi
synteny,A Nextflow pipeline for evaluating assembly quality
Organization: plant-food-research-open
Home Page: https://plant-food-research-open.github.io/assemblyqc/
synteny,Set clinker to be run remotely from a server
User: robaina
Home Page: https://pegaso.microbiologia.ull.es/clinker-server.php
synteny,Query sequence database by HMMs arranged in predefined synteny structure
User: robaina
Home Page: https://robaina.github.io/Pynteny
synteny,Pipelines for the production of Treeval data
Organization: sanger-tol
Home Page: https://pipelines.tol.sanger.ac.uk/treeval
synteny,Python library to facilitate genome assembly, annotation, and comparative genomics
User: tanghaibao
synteny,Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
User: tanghaibao
Home Page: http://chibba.agtec.uga.edu/duplication/mcscan/
synteny,Guided synteny alignment between duplicated genomes (within specified quota constraint)
User: tanghaibao
synteny,Custom scripts and workflows used in the genomics and population analysis of oat crown rust (Puccinia coronata f. sp. avenae) preprint (bioRxiv 2023.09.18.557855). All steps performed in Linux environment or R.
User: tc-hewitt
Home Page: https://doi.org/10.1101/2023.09.18.557855
synteny,Run and compare algorithms for phylogenetic reconciliation and super-reconciliation
Organization: udem-lbit
synteny,Pipeline to create phage genome synteny graphics from genbank files
User: vestalisvirginis
Home Page: https://vestalisvirginis.github.io/synphage/
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