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atlantool

Command line tool to index and search BAM files by QNAME

azure-nextflow

automate azure batch deployment

azure-nextflow-cipa

c3

C3: An R package for cross-species compendium-based cell-type identification

caps

cardiac-image-analysis

Images, macros and analysis pipelines for the quantitative analysis of cardiac parameters from microscopy images

cardiacprofiler

CardiacProfileR: An R package for extraction and visualisation of heart rate profiles from wearable fitness trackers

cidr

Clustering through Imputation and Dimensionality Reduction

cidr-comparisons

cidr-examples

Examples relating to the CIDR package.

cipa_master_training_docker

cipa_model_validation_docker

cmmolecularsignatures

Cardiomyocyte molecular signatures

companyportal

Company-Portal-Icon

conanvarvar

ConanVarvar: a versatile tool for the detection of large syndromic copy number variation from whole genome sequencing data

dcm_polygenic_study_2024

A 2024 study on polygenic risk scores and familial inheritance of dilated cardiomyopathy

dv-trio

dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCFs) created by DeepVariants are then co_called together using GATK[2]. The resultant trio VCF is then post-processing with FamSeq[3] to eliminate mendelian errors.

ecological_study_asbestos_ard_2022

A 2022 ecological study of asbestos consumption and asbestos related diseases (ARD)

falco

A quick and flexible single-cell RNA-seq processing framework on the cloud

fibroblastintegration

Code related to the integration analysis of cardiac fibroblasts

flowgrid

flowgrid_compare

from_dels_to_retrogenes

Identify retrocopied genes from whole genome sequencing structural variant clean intron deletions

georacle

georacleplus

hactive

jointsv

lama

Automatic phenotyping tool for 3D images

metadenovo

MetaDenovo : An automated framework to detect de novo mutations from whole genome trio data using cloud computing technology.

mirspring

Pipeline scripts for creating a miRspring (miRNA sequence profiling) document.