openomics Goto Github PK

.github

OpenOmics organizational profile

assembly-seek

De novo Long-read Genome Assembly Pipeline

atac-seq

baseline

A BASE template for building pipeLINEs

brakermake

Snakemake pipeline for annotating with braker and adding functional information

cell-seek

One single-cell pipeline to rule them all, one pipeline to find them, one pipeline to unify them all, and with the data bind them.

cfchip-seek

cell-free ChIP-seq pipeline

chrom-seek

An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq

chromoscope

Interactive multiscale visualization for structural variation in human genomes

cyte-seek

Awesome single-cell CITE-sequencing Pipeline

deepseq

Ultra Deep Amplicon Sequencing Analysis of NPM1 gene

dlscid

Deep Learning single-cell Identification and Annotation

dockerfiles

Dockerfiles for reproducible scientific research and beyond!

ervx

Endogenous Retrovirus Expression Pipeline for Human and Mouse for use with bulk RNA

genome-seek

Clinical Whole Genome and Exome Sequencing Pipeline

grs_sc10x

A pipeline for 10X cellranger

hervx

Pipeline to characterize Human Endogenous Retrovirus (HERV) expression

hiip

An awesome Hi-C + ChIP (HiChIP) sequencing pipeline.

istari

Perform error-prone data preparation for whole genome regression modeling

long-read-genome-assembly

PacBio data

metamorph

Metagenomics and Metatranscriptomics pipeline

metavirs

Viral Metagenomics Assembly and Annotation Pipeline

methyl-seek

Bisulphite-sequencing based methylation pipeline

mir-seek

An awesome microRNA-sequencing pipeline

modr

An awesome Oxford Nanopore Pipeline for direct RNA-sequencing

mpox-seek

A rapid pipeline for targeted ONT monkeypox sequencing

mr-seek

Mendelian Randomization pipeline

mrplotly

R package for performing Mendelian randomization with GWAS summary data

nanite

A streamlined Oxford Nanopore Viral Metagenomics Pipeline

nih-box

Archive, share, and explore projects and files on Box@NIH