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barcoding

Naïve barcode deconvolution for amplicons

bonito

A PyTorch Basecaller for Oxford Nanopore Reads

bripy

Bam Read Index for python

bwapy

Python bindings to bwa mem

centrifuge

Classifier for metagenomic sequences

clair3

Clair3 - Integrating pileup and full-alignment for high-performance long-read variant calling

cronkite

One **hell** of a reporter

currennt

Modified fork of CURRENNT https://sourceforge.net/projects/currennt/

data-rambler

An experimental language for a JSON query, transformation and streaming

dorado

Oxford Nanopore's Basecaller

drna-paper-scripts

Direct RNA publication scripts

dtr-phage-pipeline

duplex-tools

Splitting of sequence reads by internal adapter sequence search

epi2me-api

API for communicating with the EPI2ME Platform for nanopore data analysis. Used by EPI2ME Agent & CLI.

fast-ctc-decode

Blitzing Fast CTC Beam Search Decoder

fast5_research

Fast5 API provided by ONT Research

fast5mod

Extract modifed base call information from Guppy Fast5 files.

fastq-filter

Quality and length filter for FastQ data

flappie

Flip-flop basecaller for Oxford Nanopore reads

fs-inspect

node.js library for indexing the contents of a folder

getopt-win32

hammerpede

A package for training strand-specific profile HMMs for primer sets from real Nanopore data

hatch-protobuf

Hatch plugin for generating Python files from Protocol Buffers .proto files

homebrew-tap

Homebrew casks for applications from Oxford Nanopore Technologies PLC and Metrichor Ltd.

isonclust2

A tool for de novo clustering of long transcriptomic reads

jmespath-plus

JMESPath with extended collection of built-in functions

jmespath-ts

Typescript translation of the jmespath.js package

jmespath.js

Javascript implementation of JMESPath, a query language for JSON

katuali

Analysis pipelines from Oxford Nanopore Technologies' Research Division

kmer_models

Predictive kmer models for development use