3d_2d_rep_structure

3dvizongenome

ad_haplo_ml

Tools for Machine Learning on Haplotypes that Predispose Individuals and Populations to Alzheimer's disease

annotation_checker

This pipeline will check assembly and annotations based on gene families.

apeshape

A Prototype for Defining the Ancestral Alleles for Ones that Modify Human Phenotypes

areyoumeta

We aim to develop an assay that can differentiate between melanoma cells with high vs. low metastatic potential properties.

arvos

A dockerized database and flask template for presentation of RNAseq results!

assessv

atacflow

An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter

autocontain

awesome_enhancer_promoter_dbs

A semi-curated list of enhancer and promoter databases. If you know of others, please put them in issues!

barcseek

BarcSeek: A Flexible Barcode Partitioning Tool for Demultiplexing Genomic Sequencing Data

bioassay-express-applying-fair-principles-to-bioassay-protocols

biollante

Biollante: A Tool to Identify Contamination in Plant Genomic Datasets

biological-structure-segmentation-in-microscopy-images-using-deep-learning

blast-pipelines-and-fair

box_jellyfish_assembly

bringing-the-power-of-synthetic-data-generation-to-the-masses

We aim to make it easier for biomedical researchers to access and customize synthetic sequence data for the purpose of sharing and testing analysis methods as well as training and collaboration

bugs_and_drugs

A Versatile Antibiotic Resistance Pipeline

building-an-automatically-updating-interactive-web-visualizations-for-qc-metrics-of-abcd-datasets

cakecell

Segmenting cells (and other objects!) in microscopy images via neural networks.

cancer_epitopes_cshl

A pipeline to approximate the immunogenicity of peptides resulting from cancer mutations based on structure and other factors.

capnetprotstruct

Capsule Networks for improving protein secondary structure prediction accuracy

cdemapper

An automated tool to map metadata to CDEs

chervil

A detection algorithm for expression features that correspond to previous viral infection

chromatinonlinedatabase

An Online Database of 3D Chromatin Structure

clint

Linking clinical questions with fMRI research literature

clinvar_in_3d

Mapping Clinically Relevant Mutations to Protein Structures

clusterduck

Disease Clustering from Literature Based on Minimal Training Data

clustering-autism-phenotypes-by-automated-text-analysis

A versatile tool to classify diseases using cluster analysis of published phenotypic data