Topic: proteomics-data-analysis Goto Github
Some thing interesting about proteomics-data-analysis
Some thing interesting about proteomics-data-analysis
proteomics-data-analysis,Analysis of proteomics datasets obtained from ChIP-SICAP experiments in HEK cells
User: adityamahadevaniyer
proteomics-data-analysis,autoprot provides standardised, fast, and reliable proteomics data analysis while ensuring a high customisability needed to tailor the analysis pipeline to specific experimental strategies.
Organization: ag-warscheid
Home Page: https://www.warscheidlab.de
proteomics-data-analysis,Data cleaning and preparation of fenofibrate MS data
User: austinchia
proteomics-data-analysis,Data cleaning and preparation of FRZB gene protein MS data
User: austinchia
proteomics-data-analysis,tools for working with proteomics data in the Gonzalez lab
User: baynec2
proteomics-data-analysis,Proteomics development kit focused on top-down analysis
User: bdrown
proteomics-data-analysis,R Package that enables the display of protein information
User: benbruyneel
Home Page: https://benbruyneel.github.io/proteinAnnotation/
proteomics-data-analysis,Provides the ability to read results produced by the Proteome Discoverer software of Thermo Scientific
User: benbruyneel
proteomics-data-analysis,Extra (example) functions for using the proteinDiscover R package
User: benbruyneel
proteomics-data-analysis, SpecGlobX: java program that can be used when interpreting mass spectra in proteomics.
Organization: bibs-lab
Home Page: https://github.com/bibs-lab/SpecGlobX
proteomics-data-analysis,A repository to convert SDRF proteomics files into pipelines config files
Organization: bigbio
proteomics-data-analysis,Python framework for explainable omics analysis
User: breimanntools
Home Page: https://xomics.readthedocs.io
proteomics-data-analysis,All code, bash scrypts and pipelines used to analyse and visualise proteomic data from my experiments with my first Crispr KO model.
User: breisone
proteomics-data-analysis,This repository contains the code to reproduce our exploratory analysis of a pan-cancer plasma proteomics dataset, including differential expression analysis and disease classification (https://doi.org/10.1038/s41467-023-39765-y). The data can be explored in the Human Protein Atlas: www.proteinatlas.org/humanproteome/disease.
User: buenoalvezm
proteomics-data-analysis,Extract the identified peptides and proteins from spectral library search of DIA proteomic data in Skyline
User: chinmayank22
proteomics-data-analysis,Generate annotated Peptide Spectrum Matches (PSMs) from proteomic database search result
User: chinmayank22
proteomics-data-analysis,Routinely used R scripts in statistical analysis of proteomic experiment results with figure and plot generation
User: chinmayank22
proteomics-data-analysis,MaxQuant and Perseus Bug Reporting
Organization: cox-labs
proteomics-data-analysis,Exploring correlations in an isobaric labeling mass spectrometry-based proteomic data set
User: dev-ev
proteomics-data-analysis,Inspecting the quality of isobaric labeling proteomic data in a Jupyter notebook. Data output from Proteome Discoverer.
User: dev-ev
proteomics-data-analysis,Performance of Julia and Python for reading and matching mass spectrometry data
User: dev-ev
proteomics-data-analysis,a molecular solutions toolbox for molecular biologists.
User: eskutkaan-zz
Home Page: https://eskutkaan.github.io/biodata/
proteomics-data-analysis,Differential Expression Analysis tool box R lang package for omics data
Organization: fgcz
Home Page: https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.2c00441
proteomics-data-analysis,A resource for biomedical students and researchers. Includes proteomics software tools like FragPipe, MaxQuant, PDV, SearchGUI, ThermoRawFileParser, and PeptideShaker. Offers a user-friendly interface, automated identification and quantification, comprehensive data analysis, and lightweight clone feature for optimized storage.
Organization: hds-sandbox
Home Page: https://hds-sandbox.github.io/proteomics-sandbox/index.html
proteomics-data-analysis,Shiny app for making and annotating Volcano plots
User: joachimgoedhart
Home Page: https://huygens.science.uva.nl/VolcaNoseR/
proteomics-data-analysis,This is Loan Robinson Github Page, which includes all tutorials for education purpose.
User: loankimrobinson
Home Page: https://loankimrobinson.github.io/
proteomics-data-analysis,Annotation and processing of peptides from FragPipe search results
User: miguelcos
proteomics-data-analysis,HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇
User: mmasoud1
Home Page: https://mmasoud1.github.io/HistoJS/
proteomics-data-analysis,R script to perform standard analysis steps for label-free proteomics data
User: moritzmadern
proteomics-data-analysis,Workflow to perform interference modeling and interference correction for MS2-based multiplex proteomics data
User: moritzmadern
proteomics-data-analysis,The R script and relative data set for Integrated single-cell transcriptomics and proteomics reveal cellular-specific response and microenvironment remodeling in aristolochic acid nephropathy
User: nino5105
proteomics-data-analysis, The Subcelloc script provides an easy way to determine the subcellular localization of a large datasets.
User: novotnye
proteomics-data-analysis,Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.
Organization: olink-proteomics
proteomics-data-analysis,Protein Cleaver is a versatile tool for protein analysis and digestion.
User: pgarrett-scripps
Home Page: https://proteincleaver.streamlit.app/
proteomics-data-analysis,This repository describes how GeneValidator can be deployed either using Docker Compose Stack or on AWS ECS stack.
User: pigrenok
Home Page: https://wurmlab.com/tools/genevalidator/
proteomics-data-analysis,Code used for processing proteomics data associated with the publication by Yan et al., submitted to Nature Communications in 2024
User: radusuciu
proteomics-data-analysis,Repository for the R Scripts used to analyze the proteomic & phosphoproteomic data of the BioID-Dclk1 dataset
User: roberthardt
proteomics-data-analysis,WeSA (Weighted SocioAffinity): a tool for improving affinity proteomics data.
Organization: russelllab
Home Page: http://wesa.russelllab.org
proteomics-data-analysis,Pipeline y shiny app para el análisis de datos de proteómica cuantitativa label free
User: samueldelacamarafuentes
proteomics-data-analysis,Data analysis on relationship between neurodegenerative diseases and plasma/CSF protein expression levels.
User: seanyoon777
proteomics-data-analysis,Python SDK for Seer PAS
Organization: seerbio
Home Page: https://seerbio.github.io/seer-pas-sdk/
proteomics-data-analysis,Mass spectrometry Perseus Data analysis
User: sivkri
proteomics-data-analysis,An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.
Organization: slavovlab
Home Page: https://do-ms.slavovlab.net
proteomics-data-analysis,Multiplexed data-independent acquisition (plexDIA) for increasing proteomics throughput. The code is distributed by an MIT license.
Organization: slavovlab
Home Page: https://scp.slavovlab.net/plexDIA
proteomics-data-analysis,Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an MIT license.
Organization: slavovlab
proteomics-data-analysis,The SomaDataIO package loads and exports 'SomaScan' data via the 'SomaLogic Operating Co., Inc.' proprietary data file, called an ADAT ('*.adat'). The package also exports auxiliary functions for manipulating, wrangling, and extracting relevant information from an ADAT object once in memory.
Organization: somalogic
Home Page: https://somalogic.github.io/SomaDataIO/
proteomics-data-analysis,A highly specialized suite of standardized plotting routines based on the "Grammar of Graphics" framework of mapping variables to aesthetics used in 'ggplot2'. Graphics types are biased towards visualizing SomaScan (proteomic) data.
Organization: somalogic
Home Page: https://somalogic.github.io/SomaPlotr/
proteomics-data-analysis,An R package providing extended biological annotations for the SomaScan Assay, a proteomics platform developed by SomaLogic Operating Co., Inc.
Organization: somalogic
Home Page: https://somalogic.github.io/SomaScan.db/
proteomics-data-analysis,Code accompanying batch effects processing workflow for "omic" data, mainly targeted for proteomics
User: symbioticme
proteomics-data-analysis,amica: an interactive and user-friendly web-based platform for the analysis of proteomics data
User: tbaccata
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