Topic: multiomics Goto Github
Some thing interesting about multiomics
Some thing interesting about multiomics
multiomics,MOVIS: A Multi-Omics Software Solution for Multi-modal Time-Series Clustering, Embedding, and Visualizing Tasks, by Aleksandar Anžel, Dominik Heider, and Georges Hattab
User: aanzel
Home Page: https://movis.mathematik.uni-marburg.de/
multiomics,Read specialized NGS formats as data frames in R, Python, and more.
Organization: abdenlab
Home Page: https://lifeinbytes.substack.com/p/breaking-out-of-bioinformatic-data-silos
multiomics,DeepInsight3D package to deal with multi-omics or multi-layered data
User: alok-ai-lab
multiomics,Bi-level regularized flux balance analysis of Synechococcus spp. PCC 7002
Organization: angione-lab
multiomics,a multiomics approach on lung cancer (subtype approach)
User: arriagajorge
multiomics,Spark library for feature selection in multiomics using
Organization: bigbio
multiomics,The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
Organization: bigbio
multiomics,A repository to convert SDRF proteomics files into pipelines config files
Organization: bigbio
multiomics,Tutorials for scMaui
Organization: bimsbbioinfo
multiomics,ComplexHeatmap introduction
Organization: bioinfocz
multiomics,Reproducibility repo for Shashikadze et al. "Maternal hyperglycemia induces alterations in hepatic amino acid, glucose and lipid metabolism of neonatal offspring: Multi-omics insights from a diabetic pig model".
User: bshashikadze
multiomics,Github repository for nanoSPLITS manuscript data and R scripts
User: cajun-data
multiomics,A novel method for single-cell diagonal integration: scConfluence
Organization: cantinilab
Home Page: https://scconfluence.readthedocs.io/en/latest/
multiomics,scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
Organization: costalab
Home Page: https://costalab.github.io/scMEGA
multiomics,R package for de novo pathway enrichment using KeyPathwayMiner
Organization: daisybio
Home Page: https://exbio.wzw.tum.de/keypathwayminer/
multiomics,Data science and Informatics for Multiomics Integration
Organization: dimi-lab
Home Page: https://dimi-lab.github.io
multiomics,Multi-omics projects on High grade serous ovarian cancer samples
User: dkruttika
multiomics,Regional Association of Methylation variability with the Exposome and geNome (RAMEN) is an R package whose goal is to identify Variable Methylated Regions (VMRs) in microarray DNA methylation data. Additionally, using Genotype (G) and Environmental (E) data, it can identify which G, E, G+E or GxE model better explains this variability.
User: ericknavarrod
Home Page: https://ericknavarrod.github.io/RAMEN/
multiomics,SIMBA: SIngle-cell eMBedding Along with features
User: huidongchen
Home Page: https://simba-bio.readthedocs.io
multiomics,Multilayer Network analysis of medulloblastoma patients
User: ikernunezca
multiomics,A pythonic library for analysing immunopeptidomic experiments
Organization: ikmb
multiomics,R package for the correlation-based network analysis of methylation data
User: ivabudimir
Home Page: https://ivabudimir.github.io/meNet/
multiomics,util scripts for various omics data analysis
User: lakhanp1
multiomics,Evaluating the effect of SGCCA hyperparameters
User: llrs
multiomics,This repo is related to our benchmark entitled: "Decoding the microbiome-metabolome Nexus: A Systematic Benchmark of Integrative Strategies". We provide code to integrate metagenomics and metabolomics data to answer a variety of questions: such as global associations, data summarization, individual associations and feature selection.
User: lmangnier
multiomics,Main Repository for my MASTER'S THESIS PROJECT
User: manojmw
multiomics,Multi-omics differential expression and integration using PPI networks
Organization: mendenlab
multiomics,Single-Cell Data Analysis Tools
User: mvinyard
multiomics,OmicsDI Rest API client in Python
Organization: omicsdi
multiomics,An R package to access to Omics Discovery Index API
Organization: omicsdi
multiomics,Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
User: parashardhapola
Home Page: http://scarf.readthedocs.io
multiomics,Visual exploration of multi-dimensional proteomics data
Organization: phys2
multiomics,𝒫robabilistic modeling of RNA velocity ⬱
Organization: pinellolab
Home Page: https://docs.pyrovelocity.net
multiomics,Code for Highly Trustworthy Multimodal Learning (HTML) Method on Omics
Organization: pku-bdba
multiomics,This repository contains different scripts to automate and visualize analysis performed for the "Integration of proteomics with genomics and transcriptomics increases the diagnosis rate of Mendelian disorders"
Organization: prokischlab
Home Page: https://prokischlab.github.io/omicsDiagnostics/#readme.html
multiomics,Epi-Impute: single-cell RNA-seq imputation via integration with single-cell ATAC-seq data
User: raevskymichail
multiomics,MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
User: raw-lab
Home Page: https://github.com/raw-lab/mercat2/
multiomics,It contains the functional code to analyze P2 scRNA-seq and scATAC-seq data.
User: shuzwang
multiomics,BraneMF: Integration of Biological Networks for Functional Analysis of Proteins
User: surabhivj
multiomics,Project analyzing multi-omics genomics data from a COVID-19 study.
User: sylviayz
multiomics,This is a R package that intends to perform all the features possible by tensor decomposition based unsupervised feature extraction
User: tagtag
multiomics,Repository for Multi Omics data Integration for Transcriptomics and Metabolomics in RA mouse models
User: tandreani
multiomics,Analyzing TCGA cohorts and multiomic data in R
User: tarsus-lam
multiomics,Reference mapping for single-cell genomics
Organization: theislab
Home Page: https://docs.scarches.org/en/latest/
multiomics,Free thoughts live
User: twang15
multiomics,Patient stratification and molecular mechanism identification using patient clinotypes and transcriptomics embeddings
Organization: u-brite
Home Page: https://ubrite.org
multiomics,Identifying cancer-related signatures of endometrial and ovarian cancer to develop a reproductive cancer atlas.
Organization: u-brite
multiomics,Multi-omics Trustworthy Integration Framework (MoTIF)
User: yuxinglu613
multiomics,A ShinyApp for visualization and explorering Cellular Indexing of Transcriptomes and Epitopes by Sequencing (CITE-seq) data
User: zqzneptune
Home Page: https://citexpresso.net/DemoShiny/
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