Topic: biological-networks Goto Github
Some thing interesting about biological-networks
Some thing interesting about biological-networks
biological-networks,MCRM: Mother Compact Recurrent Memory
User: abduallahmohamed
biological-networks,Julia implementation of Hierarchical HotNet method
User: alyst
biological-networks,In silico therapeutic target discovery using network attractors: avoiding pathological phenotypes
User: arnaudporet
biological-networks,Converting KGML encoded KEGG pathways to the SIF file format
User: arnaudporet
biological-networks,Connecting nodes
User: arnaudporet
biological-networks,Finding paths of interest in networks
User: arnaudporet
biological-networks,Converting SBGN encoded pathways to the SIF file format
User: arnaudporet
biological-networks,Enhancing Boolean networks with continuous logical operators and edge tuning: smoothing simulations
User: arnaudporet
biological-networks,Prospecting Optimal Pathways with PYthon: Tools for creating and exploring metabolic reaction networks.
User: asplund-samuelsson
biological-networks,OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.
Organization: astrazeneca
biological-networks,3D Spiking neural network simulation exploring Spike Timing Dependent Plasticity (STDP)
User: axelwickm
biological-networks,MGN-Net: A novel Graph Neural Network for integrating heterogenous graph population derived from multiple sources.
User: basiralab
biological-networks,An application of the rational enrichment workflow to ten subgraphs from NeuroMMSig for the Human Brain Pharmacome project (https://pharmacome.scai.fraunhofer.de)
Organization: bel-enrichment
Home Page: https://bel-enrichment.github.io/results/
biological-networks,A web resource to analyze bi-partite and non-bipartite biological networks.
Organization: bhklab
Home Page: http://crosstalknet.pmgenomics.ca/
biological-networks,R package for de novo pathway enrichment using KeyPathwayMiner
Organization: biomedbigdata
Home Page: https://exbio.wzw.tum.de/keypathwayminer/
biological-networks,R package associated with paper "Component response rate variation underlies the stability of highly complex finite systems" (Duthie, AB. 2020. Sci. Rep. 10:8296, https://www.nature.com/articles/s41598-020-64401-w). This repository contains all manuscript text and supplemental information, and all code for recreating analyses.
User: bradduthie
Home Page: https://bradduthie.github.io/RandomMatrixStability/index.html
biological-networks,THREE.JS GENETIC CODE NEUTRAL NETWORK EXPLORER
User: calugo
Home Page: https://calugo.github.io/jsnet/index.html
biological-networks,Molecular interactions inference from single-cell multi-omics data
Organization: cantinilab
Home Page: https://cantinilab.github.io/HuMMuS/
biological-networks,The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
Organization: colomoto
Home Page: http://colomoto.org/notebook
biological-networks,Translation of the MOGAMUN algorithm in Python as part of a biological network modeling course.
User: dinh-sm
biological-networks,Context-sensitive creation of kinetic equations in biochemical networks
Organization: draeger-lab
Home Page: https://draeger-lab.github.io/SBMLsqueezer/
biological-networks,Drugst.One is a plug-and-play solution to make your biomedical (web-)tool drug repurposing ready. With just three lines of code the plugin can be integrated into your website within a few minues of work.
Organization: drugst-one
Home Page: https://drugst.one
biological-networks,Explore biomolecular pathways in Reactome from the command-line or a Python script
User: dvklopfenstein
biological-networks,Network diffusion-based analysis of omics for the identifcation of differentially enriched modules.
User: emosca-cnr
biological-networks,Webinar: Large-scale Biological Network Analysis and Visualization Using CyVerse
User: enggiqbal
Home Page: https://cyverse.org/webinar-NetworkAnalysis
biological-networks,This repository includes Matlab codes/routines that were used in our manuscript entitled "Importance sampling for a robust and efficient multilevel Monte Carlo estimator for stochastic reaction networks" that can be found in this preprint: https://arxiv.org/abs/1911.06286
User: hammouc
biological-networks,Using spectral graph theory to analyze two biological networks
User: huidr
biological-networks,Awesome list of research publications and media on biologically-motivated learning algorithms.
User: jsalbert
biological-networks,Probabilistic ODE model structure inference using MCMC
User: jtimonen
biological-networks,PyTorch Implementation of Biological Network Embedding.
User: kckishan
biological-networks,R Package: Steiner tree approach for graph analysis
User: krashkov
Home Page: https://github.com/krashkov/SteinerNet
biological-networks,A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.
Organization: krishnanlab
biological-networks,GitHub Repository associated with the piQTL project (Mapping effects of genome-wide genetic variation to protein-protein interactions reveals molecular mechanisms of complex traits) [ Serohijos & Michnick Lab, Université de Montréal ]
User: ladyson1806
Home Page: https://ladyson1806.github.io/SerohijosLab-piQTL/
biological-networks,Visualisation and Analysis of Networks conTaining Experimental Data
Organization: lsi-unikonstanz
Home Page: http://vanted.org
biological-networks,Cypher Queries regarding Hematological Markers Network Markers DB in Neo4j
User: michaelbatskinis95
biological-networks,Evolution of protein interactomes across the tree of life
Organization: mims-harvard
Home Page: http://snap.stanford.edu/tree-of-life
biological-networks,neuroML models for reconstructed inferior olivary cells.
User: mrio
biological-networks,Identifying frequent patterns in graphs
User: nsarang
biological-networks,PathwayMatcher is a free, open-source software to search for pathways related to a list of proteins in Reactome. This repository is the development repository. For the latest version see: https://github.com/PathwayAnalysisPlatform/PathwayMatcher
Organization: pathwayanalysisplatform
biological-networks,DANTE is a software tool for pairwise alignment of dynamic networks. It computes the topological node similarities via temporal embedding.
User: pietrocinaglia
biological-networks,Step into the future.
User: planetareum
Home Page: https://www.planetareum.org
biological-networks,The BioNE is a new pipeline that integrates embedding results from different graph embedding methods, providing a more comprehensive knowledge of the network and therefore better performance on prediction tasks.
User: pooryaparvizi
biological-networks,Here, I include my thoughts about how does the brain of the worm give rise to remarkable behavioral plasticities
User: raminmh
biological-networks,Pathway Activity Analysis and Metabolite Annotation for Untargeted Metabolomics using Probabilistic Modeling
User: ramtin92
Home Page: https://www.eecs.tufts.edu/~ramtin/
biological-networks,Translation between CellDesigner-flavoured SBML and SBGN-ML
User: royludo
Home Page: https://royludo.github.io/cd2sbgnml
biological-networks,This repository provides classic clustering algorithms and various internal cluster quality validation metrics and also visualization capabilities to analyse the clustering results
User: sankarshan-bhat
biological-networks,Mutual Interactors: A graph-based machine learning model with applications in molecular phenotype prediction
User: seyuboglu
biological-networks,PathwaySpace is an R package that creates landscape images from graphs containing vertices (nodes), edges (lines), and a signal associated with the vertices.
Organization: sysbiolab
biological-networks,Provides Tripal integration of biological networks including storage, loaders and visualzations
Organization: tripal
biological-networks,
User: wangboyunze
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