Topic: pathway-analysis Goto Github
Some thing interesting about pathway-analysis
Some thing interesting about pathway-analysis
pathway-analysis,Example workflows for refine.bio data
Organization: alexslemonade
Home Page: https://www.refine.bio
pathway-analysis,MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data
Organization: ccbr
pathway-analysis,Colorectal cancer CMs subtyping and personalized medication recommendation based on RNA seq pathway analysis
Organization: collaborativebioinformatics
pathway-analysis,A web application for exploring, analyzing, and curating pathway databases
Organization: compath
Home Page: http://compath.rtfd.io/
pathway-analysis,This repository contains the different resources derived or generated using ComPath
Organization: compath
Home Page: https://compath.github.io/compath-resources/
pathway-analysis,Scripts and data from "Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms"
Organization: coxpath
Home Page: http://doi.org/10.1093/nar/gkab556
pathway-analysis,Single sample pathway analysis tools for omics data
User: cwieder
pathway-analysis,A tutorial for pathway visualization using tidyverse, igraph, and ggraph
User: cxli233
pathway-analysis,GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
User: decodebiology
pathway-analysis,Explore biomolecular pathways in Reactome from the command-line or a Python script
User: dvklopfenstein
pathway-analysis,Template R code for bioinformatics analysis pipeline of transcriptomic Illumina datasets
User: eriklarsen4
pathway-analysis,Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
User: federicomarini
Home Page: https://federicomarini.github.io/GeneTonic
pathway-analysis,GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization
User: futianfan
Home Page: https://genocraft.stanford.edu/
pathway-analysis,Overrepresentation analysis for KEGG and PID pathways using community detection
Organization: greenelab
pathway-analysis,This repository is in support of the PathCORE-T paper (https://doi.org/10.1101/147645). It contains all the code and necessary data/metadata to repeat all analyses in the paper.
Organization: greenelab
Home Page: https://pathcore-demo.herokuapp.com
pathway-analysis,MSigDB gene sets for multiple organisms in a tidy data format
User: igordot
Home Page: https://igordot.github.io/msigdbr
pathway-analysis,Scenario analysis notebooks for the IPCC Special Report on Global Warming of 1.5°C
Organization: iiasa
Home Page: https://data.ene.iiasa.ac.at/sr15_scenario_analysis
pathway-analysis,A web application to visualize and edit the pathway models represented by SBGN Process Description Notation
Organization: ivis-at-bilkent
pathway-analysis,A web application to visualize and edit pathway models
Organization: ivis-at-bilkent
Home Page: http://newteditor.org
pathway-analysis,PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
Organization: ivis-at-bilkent
Home Page: https://www.pathwaymapper.org/
pathway-analysis,SyBLaRS: Systems Biology Layout & Rendering Service
Organization: ivis-at-bilkent
pathway-analysis,R package for pathway analysis in scRNA-seq data
User: jackbibby1
Home Page: https://jackbibby1.github.io/SCPA/
pathway-analysis,RNAdetector: a free user-friendly and stand-alone software for RNA-Seq data analysis
Organization: knowmics-lab
Home Page: https://rnadetector.atlas.dmi.unict.it/index.html
pathway-analysis,Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
User: krassowski
pathway-analysis,A Reproducible Untargeted Metabolomics Data Processing Pipeline
Organization: lemaslab
pathway-analysis,Package to calculate functional similarity between genes https://biocor.llrs.dev
User: llrs
Home Page: https://www.bioconductor.org/packages/BioCor/
pathway-analysis,Package to analyse gene sets
User: llrs
pathway-analysis,VEGA: VAE Enhanced by Gene Annotations
User: lucasesbs
Home Page: https://vega-documentation.readthedocs.io/en/latest/index.html
pathway-analysis,This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
User: malhamdoosh
pathway-analysis,An R package for multi-dimensional pathway enrichment analysis
User: markziemann
Home Page: https://bioconductor.org/packages/mitch
pathway-analysis,A python library for programmatic usage of EBI InterPro Genome Properties.
Organization: micromeda
Home Page: http://pygenprop.rtfd.io/
pathway-analysis,Disease pathways in the human interactome
Organization: mims-harvard
Home Page: http://snap.stanford.edu/pathways
pathway-analysis,█ 𝐓𝐇𝐈𝐒 𝐈𝐒 𝐀 𝐌𝐈𝐑𝐑𝐎𝐑 𝐎𝐅 𝐓𝐇𝐄 𝐒𝐀𝐌𝐄 𝐑𝐄𝐏𝐎𝐒𝐈𝐓𝐎𝐑𝐘 𝐎𝐍 𝐁𝐈𝐓𝐁𝐔𝐂𝐊𝐄𝐓 – 𝐓𝐇𝐈𝐒 𝐏𝐀𝐆𝐄 𝐈𝐒 𝐍𝐎𝐓 𝐌𝐎𝐍𝐈𝐓𝐎𝐑𝐄𝐃 – 𝐏𝐋𝐄𝐀𝐒𝐄 𝐒𝐄𝐄 𝐓𝐇𝐄 𝐁𝐈𝐓𝐁𝐔𝐂𝐊𝐄𝐓 𝐏𝐀𝐆𝐄 𝐅𝐎𝐑 𝐓𝐇𝐄 𝐋𝐀𝐓𝐄𝐒𝐓 𝐃𝐄𝐓𝐀𝐈𝐋𝐒
User: mjr129
Home Page: https://bitbucket.org/mjr129/metaboclust
pathway-analysis,Flexible gene set enrichment analysis
Organization: nki-ccb
pathway-analysis,AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
User: nsalomonis
Home Page: http://www.altanalyze.org
pathway-analysis,Mathematical Programming tool for inferring node values in perturbed biological pathways.
Organization: oicr
Home Page: https://oicr.github.io/mp-biopath
pathway-analysis,An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
User: omixer
pathway-analysis,PathwayMatcher is a free, open-source software to search for pathways related to a list of proteins in Reactome. This repository is the development repository. For the latest version see: https://github.com/PathwayAnalysisPlatform/PathwayMatcher
Organization: pathwayanalysisplatform
pathway-analysis,A project for exploring differentially active signaling paths related to proteomics datasets
Organization: pathwayanddataanalysis
pathway-analysis,A Python package for benchmarking pathway database with functional enrichment and classification methods
Organization: pathwayforte
Home Page: https://pathwayforte.readthedocs.io/
pathway-analysis,Results of the evaluation of pathway databases using TCGA datasets
Organization: pathwayforte
pathway-analysis,Harmonizing pathway databases using Biological Expression Language (BEL)
Organization: pathwaymerger
Home Page: https://pathme.scai.fraunhofer.de/
pathway-analysis,A web application for visualizing and exploring pathway knowledge in Biological Expression Language (BEL)
Organization: pathwaymerger
Home Page: https://pathme.scai.fraunhofer.de/
pathway-analysis,Differential gene expression analysis and pathway analysis of RNAseq data
Organization: qbic-pipelines
pathway-analysis,A manually curated database of human gut metabolic modules.
Organization: raeslab
pathway-analysis,A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
Organization: raeslab
pathway-analysis,python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
Organization: reactome
Home Page: https://reactome.github.io/reactome2py
pathway-analysis,GRAPH Interaction from pathway Topological Environment
Organization: sales-lab
pathway-analysis,WikiPathways Database
Organization: wikipathways
Home Page: https://www.wikipathways.org
pathway-analysis,Visualization of Functional Enrichment Result
Organization: yulab-smu
Home Page: https://yulab-smu.top/biomedical-knowledge-mining-book/
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