Topic: wikipathways Goto Github
Some thing interesting about wikipathways
Some thing interesting about wikipathways
wikipathways,This ebook has information about life science databases, their SPARQL endpoints, what information they hold, what data models they use, and how to query those.
Organization: bigcat-um
Home Page: https://bigcat-um.github.io/PRA3006-SPARQL/
wikipathways,Integration of pathway-related information from WikiPathways in BEL
Organization: bio2bel
Home Page: http://bio2bel-wikipathways.rtfd.io
wikipathways,Bioclipse plugins for WikiPathways and PathVisio
Organization: bioclipse
wikipathways,Access to Biological Web Services from Python.
User: cokelaer
Home Page: http://bioservices.readthedocs.io
wikipathways,A compilation of pathway gene sets
User: dhimmel
Home Page: https://doi.org/10.15363/thinklab.d72
wikipathways,KNIME nodes for WikiPathways.
User: egonw
wikipathways,#metawinterschool contribution by BiGCaT
User: egonw
wikipathways,Mapping WikiPathways to chromosomes
User: egonw
Home Page: https://egonw.github.io/wikipathways-chromosomes/
wikipathways,Ready-to-use curated genesets for cinaR
User: eonurk
wikipathways,Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...
User: francescopatane96
wikipathways,Collect chemical reactions from a GPML file and look for matching Rhea equations.
User: larsgw
wikipathways,Repository for code to create the Europe PMC external links
Organization: wikipathways
wikipathways,GPML2RDF converter
Organization: wikipathways
wikipathways,Project to convert content of WPRDF into nanopublications.
Organization: wikipathways
wikipathways,Python Client Package for WikiPathways
Organization: wikipathways
Home Page: https://pywikipathways.readthedocs.io/
wikipathways,Converts Reactome pathways to GPML format
Organization: wikipathways
wikipathways,Temporary repository of RDF of selected pathways from WikiPathways, supporting the Wikidata bot.
Organization: wikipathways
Home Page: https://wikipathways.github.io/SARS-CoV-2-WikiPathways/
wikipathways,Queries for the WikiPathways SPARQL endpoint.
Organization: wikipathways
Home Page: https://sparql.wikipathways.org/
wikipathways,WikiPathways Summit Planning
Organization: wikipathways
Home Page: https://gladstone.org/WP18Summit
wikipathways,WikiPathways Database
Organization: wikipathways
Home Page: https://www.wikipathways.org
wikipathways,WikiPathways SPARQL Book
Organization: wikipathways
Home Page: https://wikipathways.github.io/WikiPathways-SPARQL-book/
wikipathways,The main web site for the WikiPathways project.
Organization: wikipathways
Home Page: http://wikipathways.org
wikipathways,OpenAPI to extract information from WikiPathways.
Organization: wikipathways
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