Thomas Cokelaer's Projects
Bunch of tools for book-keeping
Data analysis related to the bioconda paper
Conda recipes for the bioconda channel.
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
Bioinformatics in Python
Access to Biological Web Services from Python.
A Sniffer for Biological formats
A tool to circularize genome assemblies
New home page
Utilities to visualise and create matplotlib colormaps and various color codecs
set of conda recipes for various tools
Snakemake pipeline wrapping sequana_coverage to analyse several samples at the same time
singularity environment manager (application to NGS and bioinformatics)
Statistical exploration of codon usage
Sequana demultiplexing pipeline
Denovo Assembly from FASTQ files
Deplete Fastq files from human or other content
down sample NGS data
Common utilities to ease the development of Python packages
A conda-smithy repository for easydev.
Tools used to generate the SciPy conference proceedings
sequana pipeline to perform parallel fastqc and summarize results with multiqc plot
Scripts and R functions used to perform Analysis of Variance on the GDSC1000 data, thus to identify statistical interactions between genomic features and drug response, and produce formatted results and figures
Fit data to many distributions
Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
dot and other graphviz executable in a simple singularity container
homepage