Topic: gene-set-enrichment-analysis Goto Github
Some thing interesting about gene-set-enrichment-analysis
Some thing interesting about gene-set-enrichment-analysis
gene-set-enrichment-analysis,The Tasmanian devil is endangered due to Devil Facial Tumour Disease (DFTD), a contagious cancer with no current treatment. Previous study has investigated the anticancer properties of Tasmanian devil cathelicidins. This report intends to reproduce the enrichment analysis results of the study and further analyze their data.
User: arashsm79
Home Page: https://www.nature.com/articles/s41598-023-39901-0
gene-set-enrichment-analysis,Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...
User: francescopatane96
gene-set-enrichment-analysis,Gene Set Enrichment Analysis and Over Representation Analysis analysis using R
Organization: gencorefacility
gene-set-enrichment-analysis,Snakemake pipeline to benchmark 11 functional pathway annotation systems
Organization: meringlab
gene-set-enrichment-analysis,Web application that enables users to compare the expression of genes or enrichment of gene sets between different molecular subtypes of colorectal cancer
User: molecularpathologylab
Home Page: https://SubtypeExploreR.qub.ac.uk
gene-set-enrichment-analysis,Expression, biological and clinical relevance of the collagen pathway genes in prostate carcinoma
User: piotrtymoszuk
gene-set-enrichment-analysis,Role of CXCL9/10/11, CXCL13 and XCL1 in recruitment and suppression of cytotoxic T cells in renal cell carcinoma
User: piotrtymoszuk
gene-set-enrichment-analysis,Assessing the effectiveness of endocrine therapy in breast cancer using RNAseq data
User: thimler
gene-set-enrichment-analysis,Gene set enrichment analysis from scRNA seq data : in search of the original tissue
User: thimler
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