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alps-app

R Shiny App for calculation of the ALPS (Austrian Long COVID Prediction Score)

analysis_tools

Tools for basic hypothesis-testing tasks (Chi, T, U, one-way ANOVA and Kruskal-Wallis test) and attractive result visualization

biggrextra

metabolic pathway modeling based on gene expression

bootstat

Bootstrap Interface for Descriptive Statistics

caretextra

Tools for quality control, prediction and plotting for caret models

celltrax

Enhanced graphics and analysis tools for the cell tracing analysis celltrackR package

celltrax_analysis_app

Celltrax tracking data analysis app

celltrax_preprocess_app

Celltrax pre-processing Shiny app for microscopy cell tracing data

cluster_tools

A set of functions for hierarchical, k-means, PAM and DB scan clustering with R

clustering-tools-2

An updated, comprehensive toolbox of component analysis and clustering tools based on base R and factoextra package functions

clusttools

Comprehensive dimensionality reduction and cluster analysis toolset

collagen_pca

Expression, biological and clinical relevance of the collagen pathway genes in prostate carcinoma

counting-tools

A toolbox for basic two and more sample hypothesis testing

cov-vaccination-post9

Analysis pipeline of the OWID data for the blog post 9

covfacs

Immunophenotyping of blood myeloid leukocytes from healthy controls and COVID-19 patients

covild-ipq

Analysis pipeline for modeling of illness perception one year after COVID-19

covild-plus

Analysis pipeline for the 12-month follow-up of the CovILD study

covild-recovery-assessment-app

Code of the CovILD Pulmonary Assessment online Shiny App

covild_6_months

Complete analysis and visualization pipeline for the 6 month time point evaluation of the CovILD Study

covild_metabolic

Effects of lipid turnover and glycemia on pulmonary COVID-19 recovery

coxextensions

Extended diagnostic and visualization tools for Cox proportional hazard models in R

cxcl-rcc

Analysis of role of CXCL9/10/11 and CXCR3 in renal cancer

cxcr4-tcga

cxcr4-tcga-analysis-pipeline

A complete PAAD TCGA cohort analysis pipeline for the paper by Kocher et al

deseq

Skeleton of the legacy DESeq package: a patch for loading packages depending on it

exda

R toolset for efficient explorative data analysis.

figur

figur: Smart Handling of Figures, Tables and Code in RMarkdown Documents

gseatools

Tools for management of gene signatures

health-after-covid19-analysis-pipeline

Revised R analysis pipeline for the preprint 'Phenotyping of acute and persistent COVID-19 features in the outpatient setting: exploratory analysis of an international cross-sectional online survey', DOI: 10.1101/2021.08.05.21261677

htglmnet

High Throughput Light Weight Regularized Regression Modeling for Molecular Data