dvklopfenstein Goto Github PK

ascii_plots

Convenience function for quick and dirty data analysis

bamnostic

a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

biocode

Various Biology Links

bioconda-recipes

Conda recipes for the bioconda channel.

cv_and_thesis

Curriculum Vitae and PhD thesis of D. V. Klopfenstein

data_pa_gov

Work with the opendata from the Commonwealth of Pennsylvania

enrichmentanalysis

Generic enrichment analysis

flowkit

A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces

genanki

A Python 3 Library for Generating Anki Decks

goatools

Python library to handle Gene Ontology (GO) terms

goatools_simulation

Stochastic Gene Ontology Enrichment Analyses (GOEA) Simulations in manscript + Multiple-Test Correction Simulations

gossto

Gene Ontology Semantic Similarity Tool

hands-on-data-analysis-with-pandas-2nd-edition

Materials for following along with Hands-On Data Analysis with Pandas – Second Edition

handson-ml2

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

intervaltree

A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.

journalclub

Repo for Dampier computational journal club

khal

:calendar: CLI calendar application

localgpt

Chat with your documents on your local device using GPT models. No data leaves your device and 100% private.

login-attempt-simulator

Simulation of regular login activity on a site and random activity from a hacker using a brute-force password guessing attack.

miim_517_privacy_policy

Privacy policy for biostatistics course, MIIM-517 at Drexel University

ml-utils

Machine learning utility functions and classes.

nanocomp

Comparison of multiple long read datasets

omics

Drexel Medicine OMICS course

papermill

📚 Parameterize, execute, and analyze notebooks

philly

planet-cute

PlanetCute tileset by Daniel Cook in SVG format.

pmidcite

Turbocharge a PubMed literature search using citation counts and data from the NIH

princetonalgorithms

Python implementations of selected Princeton Java Algorithms and Clients by Robert Sedgewick and Kevin Wayne

prtgitlog

Print 'git log' output in a concise and informative format