Topic: alternative-splicing Goto Github
Some thing interesting about alternative-splicing
Some thing interesting about alternative-splicing
alternative-splicing,A snakemake workflow to perform Alternative Splicing analysis from RNA-Seq with SUPPA2.
User: angrymaciek
alternative-splicing,
User: antoineszatkownik
alternative-splicing,Reproducibility of "Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues."
User: areyesq89
alternative-splicing,Method to identify temporal and sex-specific alternative splicing from multi-omic data, specifically RNA-seq + (CUT&RUN or ChIP-seq).
User: ashleymaeconard
alternative-splicing, An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.
Organization: bioanalyticresource
Home Page: https://bar.utoronto.ca/eFP-Seq_Browser/
alternative-splicing,Code and scripts for the RNA-seq analysis of project: SMG5-SMG7 authorize nonsense-mediated mRNA decay by enabling SMG6 endonucleolytic activity
User: boehmv
Home Page: http://www.uni-koeln.de/math-nat-fak/genetik/groups/Gehring/#home
alternative-splicing,Code and scripts for the RNA-seq analysis of project: Deciphering the cellular roles and dissecting functional regions of UPF3A and UPF3B in human NMD
User: boehmv
Home Page: http://www.uni-koeln.de/math-nat-fak/genetik/groups/Gehring/#home
alternative-splicing,Computational biology pipeline that quantifies RNA splicing and performs sQTL mapping
User: breecoffey
alternative-splicing,Vials is a Caleydo Web application for visualizing alternative splicing based on mRNAseq data.
Organization: caleydo
Home Page: http://vials.io
alternative-splicing,Reading Genomic Files and provide data as API
Organization: caleydo
Home Page: http://vials.io
alternative-splicing,ISOform-guided prediction of epiTOPEs in cancer
Organization: comprna
alternative-splicing,Baltica: integrated differential junction usage
Organization: dieterich-lab
Home Page: https://dieterich-lab.github.io/Baltica/
alternative-splicing,The package RNAseqAnalysis does the complete analysis of RNA seq data starting from raw reads. It provides the user with differnt functions like generation of qc report, filtering, assembly and GO-term annotation, differential expression analysis and heatmap generation, and Alternative splicing-site prediction
User: disc-iisr
alternative-splicing,The statistical utility for RBP functions (SURF)
User: fchen365
alternative-splicing,📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.
User: hclimente
Home Page: https://github.com/hclimente/spada
alternative-splicing,⚔️Find splicing-led, functional changes of the proteome.
User: hclimente
alternative-splicing,Alternative Splicing ToolKit
User: huang-sh
Home Page: https://huang-sh.github.io/astk-doc/
alternative-splicing,BRIE: Bayesian Regression for Isoform Estimate in Single Cells
User: huangyh09
Home Page: https://brie.readthedocs.io
alternative-splicing,Tutorials for using BRIE
User: huangyh09
Home Page: https://brie.readthedocs.io
alternative-splicing,Dynamic Isoform spliCing Estimator via sequencing data
User: huangyh09
Home Page: http://diceseq.sourceforge.net
alternative-splicing,NGS Tutorial
User: imamachi-n
alternative-splicing,IsoAligner: dynamic mapping of amino acid positions across protein isoforms
User: jacobhanimann
Home Page: https://www.isoaligner.org
alternative-splicing,Functional impact of cancer-specific isoform switching events: Visualization via STRING interaction network
User: karakulaktulay
Home Page: https://www.caniso.net
alternative-splicing,This repository contains all the studies made in colaboration with IMIBIC
Organization: kdis-lab
alternative-splicing,Performing Cancer Diagnosis via an Isoform Level Expression Ranking-based LSTM Model
Organization: kdis-lab
Home Page: http://www.uco.es/kdis/isolstm
alternative-splicing,A supervised methodology for analyzing dysregulation in splicing machinery: an application in cancer diagnosis.
Organization: kdis-lab
alternative-splicing,This repository is for our 2024 manuscript, Cell-type-specific alternative splicing in the cerebral cortex of a Schinzel-Giedion Syndrome patient variant mouse model
Organization: lasseignelab
alternative-splicing,A network-based approach for exon set enrichment
User: louadi
alternative-splicing,AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
User: nsalomonis
Home Page: http://www.altanalyze.org
alternative-splicing,Alternative splicing event annotation for Human assembly (hg19)
User: nuno-agostinho
Home Page: https://bioconductor.org/packages/alternativeSplicingEvents.hg19
alternative-splicing,Alternative splicing event annotation for Human assembly (hg38)
User: nuno-agostinho
Home Page: https://bioconductor.org/packages/alternativeSplicingEvents.hg38
alternative-splicing,Interactive R package to quantify, analyse and visualise alternative splicing
User: nuno-agostinho
Home Page: http://nuno-agostinho.github.io/psichomics/
alternative-splicing,Docker to run rMATS for splicing quantification and analysis
User: nuno-agostinho
alternative-splicing,Docker to run VAST-TOOLS for splicing quantification and analysis
User: nuno-agostinho
alternative-splicing,Docker to run Whippet for splicing quantification and analysis
User: nuno-agostinho
alternative-splicing,A tool to model the evolution and structural impact of alternative splicing
Organization: phylosofs-team
alternative-splicing,Use Thor's Axe to cut exons into their evolutionary building blocks :zap:
Organization: phylosofs-team
Home Page: https://phylosofs-team.github.io/thoraxe
alternative-splicing,Method for retrieving and visualising the protein domains of any protein coding isoform and of different genomes. Enables joint visualisations representing alternative splicing events.
User: rubenchazarra
alternative-splicing,Depository for Bioinformatics Master Project HT2022-VT2023
User: theorangebraincell
alternative-splicing,Lightweight and Fast; RNA-seq quantification at the event-level
User: timbitz
alternative-splicing,SimSpliceEvol: Alternative splicing-aware simulation of biological sequence evolution
Organization: udes-cobius
Home Page: https://simspliceevol.cobius.usherbrooke.ca/
alternative-splicing,Algorithm to infer clusters of isoorthologous transcripts using gene-level homology relationships and a Reciprocal Best Hits approach
Organization: udes-cobius
alternative-splicing,Discover differential transcript usage from polyA-captured single cell RNA-seq data
Organization: vccri
alternative-splicing,
Organization: wanluliulab
Home Page: https://labw.org/yasim-docs/
alternative-splicing,Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
Organization: xinglab
alternative-splicing,Spicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data
User: yollct
alternative-splicing,Quantification and Visualization of Variations of Splicing in Population
User: yuhuihui2011
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