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vials_server's Introduction

vials_server Phovea NPM version Build Status Dependency Status

The vials server reads genomic files and provide data as API. It is recommended to use it in conjunction with vials.

Installation

git clone https://github.com/caleydo/vials_server.git
cd vials_server
npm install

Testing

npm test

Building

npm run build

This repository is part of Phovea, a platform for developing web-based visualization applications. For tutorials, API docs, and more information about the build and deployment process, see the documentation page.

vials_server's People

Contributors

alexsb avatar hendrikstrobelt avatar jrbotros avatar sgratzl avatar

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larryyang1980

vials_server's Issues

Update or merge installation guide in README

Below you see the former installation guide that seems to be out-dated and not working with the most recent Caleydo Web version.

@HendrikStrobelt Please merge or update the readme.


Install

You need to checkout caleydo-web

  • git checkout <url> into c.web static/scripts
  • add to data/index.json:
    {
        "name": "GenomeBrowser",
        "path": "genomelink.csv",
        "type": "genomeDataLink",
        "idtype":"gdLink"
    },

  • add to data/idtypes.json:
    {
        "id": "gdLink",
        "internal": true,
        "name": "gdlink Columns"
    }
  • add a file data/genomelink.csv with content (2 lines):
x,serveradress
0,http://localhost:5000/bam

  • run node configgenerator.js in root of c.web. This will integrate the plugin into
    the build file for grunt
  • run grunt build
  • (run the data service provider on port 5000)
  • run grunt serverd and keep fingers crossed :)

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