Topic: epigenomics Goto Github
Some thing interesting about epigenomics
Some thing interesting about epigenomics
epigenomics,A Suite of R Packages for NGS-based Epigenomic Data Analysis.
User: andrealauria104
epigenomics,A user-friendly toolkit for QC, counting, clustering and plotting of single-cell (epi)genomics data
Organization: bhardwaj-lab
Home Page: http://sincei.rtfd.io/
epigenomics,Source code for the EpiVar browser, a web application to search for eQTL/epigenetic signal-associated variants and merge bigWig tracks by genotype.
Organization: c3g
Home Page: https://computationalgenomics.ca/tools/epivar
epigenomics,Bead-based single-cell atac processing
User: caleblareau
Home Page: http://caleblareau.github.io/bap
epigenomics,Molecular interactions inference from single-cell multi-omics data
Organization: cantinilab
Home Page: https://cantinilab.github.io/HuMMuS/
epigenomics,Tool to estimate purity of tumor samples exploiting DNA Methylation data
Organization: cgplab
epigenomics,Tools for epigenetic data analysis
User: constantingoeldel
epigenomics,snakemake workflow for random forest based feature selection on chromHMM data
User: crazyhottommy
epigenomics,U-Net for genomics
User: daquang
epigenomics,The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
User: dohlee
epigenomics,:comet: Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)
User: dohlee
epigenomics,Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data
User: eblancoga
epigenomics,FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
Organization: epifluidlab
Home Page: https://epifluidlab.github.io/FinaleToolkit/
epigenomics,Analysis for "K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas" (Jessa et al, Nature Genetics, 2022)
Organization: fungenomics
Home Page: https://fungenomics.github.io/HGG-oncohistones/
epigenomics,Multigranular Analysis of Regulatory Variants on the Epigenomic Landscape
User: fuxialexander
epigenomics,Differential Epigenetic Correlation Test
User: gabrielhoffman
Home Page: https://gabrielhoffman.github.io/decorate
epigenomics,Methods for training and interpretation of an ensemble of neural networks for multi-task functional prediction of accessibility or histone modifications from DNA sequence.
Organization: gifford-lab
epigenomics,Jointly characterizing epigenetic dynamics across multiple cell types
User: guanjue
epigenomics,The data preprocessing pipeline for the VISION project (for mouse data)
User: guanjue
epigenomics,Application for semi-automated genomic annotation.
Organization: hoffmangroup
Home Page: http://segway.hoffmanlab.org/
epigenomics,An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.
Organization: huising-lab
epigenomics,AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
User: itsvenu
Home Page: https://bioconductor.org/packages/ALPS
epigenomics,Toolkit for circRNA prediction by machine learning
User: johnlcd
epigenomics,Latent representation of the human pan-celltype epigenome through a deep recurrent neural network.
User: kevinbdsouza
epigenomics,Toolkit for single-cell DNA methylation analysis.
User: lhqing
Home Page: https://lhqing.github.io/ALLCools/intro.html
epigenomics,Epigenome-wide analysis of DNA methylation from Alzheimer's patients and unaffected controls
Organization: lieberinstitute
epigenomics,Python package to analyze DNA methylation data
User: liguowang
epigenomics,Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
User: ma-compbio
epigenomics,Cell type-specific Histone Acetylation Score
Organization: marzi-lab
epigenomics,Resource for summarizing and tracking new array samples published to NCBI's Gene Expression Omnibus (GEO) database.
User: metamaden
Home Page: https://metamaden.github.io/geoarraydigest/
epigenomics,Methods for summarizing and visualizing multi-biosample functional genomic annotations
User: meuleman
Home Page: https://epilogos.net
epigenomics,Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Organization: nf-core
Home Page: https://nf-co.re/methylseq
epigenomics,Materials used during #NGSchool2017
Organization: ngschooleu
Home Page: https://ngschool.eu/2017
epigenomics,Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders
Organization: novartis
Home Page: http://peax.lekschas.de
epigenomics,Multiomix platform source code
Organization: omics-datascience
Home Page: https://multiomix.org
epigenomics,Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
Organization: pinellolab
epigenomics,Multiome GRN inference.
Organization: quadbio
Home Page: https://quadbio.github.io/Pando/
epigenomics,echoverse module: Annotate fine-mapping results
Organization: rajlabmssm
epigenomics,Magnipore: Differential single nucleotide changes of ONT signals
Organization: rnajena
epigenomics,
User: salbrec
epigenomics,Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague
User: schulzlab
epigenomics,Snakemake pipeline for analysis and normalization of ATAC-seq data starting from fastq.gz files.
User: sebastian-gregoricchio
epigenomics,An R/Bioconductor package for detecting chromatin state switches
User: sjessa
Home Page: https://bioconductor.org/packages/chromswitch
epigenomics,epigenome scale metabolic modeling for cancer metabolism
Organization: sriram-lab
epigenomics,BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
Organization: transbiozi
epigenomics,ChromSCape
Organization: vallotlab
Home Page: https://vallotlab.github.io/ChromSCape/
epigenomics,Find risk snp in the LD region of GWAS snps by convolutional neural network
User: wugene
epigenomics,:dart: ChIP peak Annotation, Comparison and Visualization
Organization: yulab-smu
Home Page: https://onlinelibrary.wiley.com/share/author/GYJGUBYCTRMYJFN2JFZZ?target=10.1002/cpz1.585
epigenomics,Predicting regulatory DNA elements based on epigenomic signatures
User: yupenghe
epigenomics,
Organization: zhanggroup-mitchemistry
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