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alps

AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project

another-test

just testinggg

centerofmass-protein

Coordinates of center of mass and distance of each residue from COM.

consensussequence

Finding the most likely common ancestor / a consensus sequence of a group of sequences.

datascience-projects

ML/DS projects with a blogpost 📝 ✒️ @ https://itsvenu.github.io/

debruijn_assembly

k-mer based assembly of sequence by the help of deBruijn grpah

detect_homopolymer

Script detects whether the variant called from NGS data is in Homopolymer site on reference genome(hg19).

halflife-protein

Protein in vivo half life: N-end Rule

intad-shiny

inTAD-shiny development

ismb2019

R package to get tweets from ISMB/ECCB 2019 conference, Basel. Full doc: itsvenu.github.io/ismb2019/

itsvenu.github.io

Blog

k-merstats-genomics

Scripts useful analyzing genomic sequences in terms of k-mers

machinelearning-a2z

ML Roadmap 🛣️📌⏳

myc-manuscript

Specific analysis code bits for JE,VT 2020 (excluding custom pipelines)

nt-sequenceanalysis

Various scripts for analysing the nucleotide sequences. Number of nucleotides, GC content of sequences etc.

oneliners

OneLiners

parsepdb

Parse pdb file

protein-contact-map

Neighboring residues of each residue within 8A distance.

protein-distancemeasures

Evidence of protein CT folding from structure.

protein-gravy

Protein Grand Average of Hydropathy.

proteincompactness

Compactness of a protein conformation through Radius of Gyration & Moment of Inertia

proteinstats

Amino acid composition of a protein sequence

sequenceminer

Connects to online databases - PDB, PFAM, RFAM, EMBL, PROSITE, UNIPROT.

signatures-manuscript

Mutational Signatures extraction - Pediatric cancers

terminalhydrophobicity

Terminal hydrophobicity of a sequence - Important for determination of CT protein folding

testvt