fungenomics Goto Github PK
Name: Kleinman Lab
Type: Organization
Bio: Analysis, tools, and software for functional genomics to understand cancer and brain development
Location: McGill University
Kleinman Lab's Projects
braindex
A web portal for exploring scRNAseq data in the developing brain, including our in-house atlas of the E10-P6 forebrain and brainstem
chromswitch
An R/Bioconductor package for detecting chromatin state switches
chromswitch-analysis
Code and data to accompany the chromswitch paper, "chromswitch: A flexible method for detecting chromatin state switches" (Jessa and Kleinman, Bioinformatics, 2018)
cytobox
A toolbox for analysis and highly-customizable visualization of single cell data
g34-gliomas
Cell-of-origin analysis for "Histone H3.3G34-mutant interneuron progenitors co-opt PDGFRA for gliomagenesis" (Chen*, Deshmukh*, Jessa*, Hadjadj*, et al, Cell, 2020)
hgg-oncohistones
Analysis for "K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas" (Jessa et al, Nature Genetics, 2022)
parameterized_report
Parameterized report and interactive plot introduction and demo
sandbox
A sandbox to test our workflow
sccoannotate
Pipeline for consensus prediction of cell types in single-cell RNA sequencing data.
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